miRNA display CGI


Results 1 - 20 of 1100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6560 5' -59.8 NC_001847.1 + 34492 0.66 0.746536
Target:  5'- ----cCCGCCGC-AGCaGcGCGGCCCugGCg -3'
miRNA:   3'- gaaacGGCGGCGaUCG-C-CGCUGGG--CG- -5'
6560 5' -59.8 NC_001847.1 + 84611 0.66 0.746536
Target:  5'- ---cGCCGCUGCgucgccuucgAGCGG-GGCcaugCCGCg -3'
miRNA:   3'- gaaaCGGCGGCGa---------UCGCCgCUG----GGCG- -5'
6560 5' -59.8 NC_001847.1 + 15219 0.66 0.746536
Target:  5'- ---cGUCGCCGCggucgAGCuGGCGucGgCCGUa -3'
miRNA:   3'- gaaaCGGCGGCGa----UCG-CCGC--UgGGCG- -5'
6560 5' -59.8 NC_001847.1 + 55473 0.66 0.746536
Target:  5'- ---cGCCG-CGCUAGCcGCuGCCCuGCu -3'
miRNA:   3'- gaaaCGGCgGCGAUCGcCGcUGGG-CG- -5'
6560 5' -59.8 NC_001847.1 + 47864 0.66 0.746536
Target:  5'- --gUGCUGCgcgggCGCgcgcAGCGcGCGcgcGCCCGCg -3'
miRNA:   3'- gaaACGGCG-----GCGa---UCGC-CGC---UGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 15448 0.66 0.746536
Target:  5'- --cUGgCGCUGCUgaaaagcguGGCGGCGcacgGCgCGCa -3'
miRNA:   3'- gaaACgGCGGCGA---------UCGCCGC----UGgGCG- -5'
6560 5' -59.8 NC_001847.1 + 133360 0.66 0.746536
Target:  5'- --gUGCUGCUGCUcucgacGCGG-GACCUGg -3'
miRNA:   3'- gaaACGGCGGCGAu-----CGCCgCUGGGCg -5'
6560 5' -59.8 NC_001847.1 + 87490 0.66 0.746536
Target:  5'- aCUUgGCCG-UGCUcGGCGGCuGCuuGCa -3'
miRNA:   3'- -GAAaCGGCgGCGA-UCGCCGcUGggCG- -5'
6560 5' -59.8 NC_001847.1 + 37699 0.66 0.746536
Target:  5'- ---cGCgGCUGC-GGCGcGCGGCUgCGCa -3'
miRNA:   3'- gaaaCGgCGGCGaUCGC-CGCUGG-GCG- -5'
6560 5' -59.8 NC_001847.1 + 66529 0.66 0.746536
Target:  5'- ---cGCgGCUGggGGCGcaGCGACCgCGCc -3'
miRNA:   3'- gaaaCGgCGGCgaUCGC--CGCUGG-GCG- -5'
6560 5' -59.8 NC_001847.1 + 129986 0.66 0.746536
Target:  5'- ---cGCCGCCGau-GCc-UGGCCCGCa -3'
miRNA:   3'- gaaaCGGCGGCgauCGccGCUGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 125335 0.66 0.746536
Target:  5'- ---aGCCGCgcugaaCGCcAGCGGCcGGCCagaCGCa -3'
miRNA:   3'- gaaaCGGCG------GCGaUCGCCG-CUGG---GCG- -5'
6560 5' -59.8 NC_001847.1 + 116688 0.66 0.746536
Target:  5'- ---cGgCGCUGCgGGC-GCGGCaCCGCa -3'
miRNA:   3'- gaaaCgGCGGCGaUCGcCGCUG-GGCG- -5'
6560 5' -59.8 NC_001847.1 + 114686 0.66 0.746536
Target:  5'- ---aGCCGCCGCggccuGCuGGaCGccuUCCGCg -3'
miRNA:   3'- gaaaCGGCGGCGau---CG-CC-GCu--GGGCG- -5'
6560 5' -59.8 NC_001847.1 + 30547 0.66 0.746536
Target:  5'- --gUGCUGCUGCUcucgacGCGG-GACCUGg -3'
miRNA:   3'- gaaACGGCGGCGAu-----CGCCgCUGGGCg -5'
6560 5' -59.8 NC_001847.1 + 13107 0.66 0.746536
Target:  5'- ---cGCCGCCGUccuccucGGCuGCGG-CCGCg -3'
miRNA:   3'- gaaaCGGCGGCGa------UCGcCGCUgGGCG- -5'
6560 5' -59.8 NC_001847.1 + 73178 0.66 0.746536
Target:  5'- ---gGCgGaCGC-GGCGGCGgagucgGCCCGCg -3'
miRNA:   3'- gaaaCGgCgGCGaUCGCCGC------UGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 35365 0.66 0.743681
Target:  5'- ---gGCCGCUGCcccccgcccaaagccGCGGCGGCUCa- -3'
miRNA:   3'- gaaaCGGCGGCGau-------------CGCCGCUGGGcg -5'
6560 5' -59.8 NC_001847.1 + 55087 0.66 0.742728
Target:  5'- ---gGCaCGUCGUUcucgcaccucggcGGCGGCGAugacgccgacccccCCCGCg -3'
miRNA:   3'- gaaaCG-GCGGCGA-------------UCGCCGCU--------------GGGCG- -5'
6560 5' -59.8 NC_001847.1 + 15038 0.66 0.740819
Target:  5'- ---gGCCGCCgggcgaGCUGuGCgagcgccaucugaccGGCGGCCCGg -3'
miRNA:   3'- gaaaCGGCGG------CGAU-CG---------------CCGCUGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.