miRNA display CGI


Results 1 - 20 of 1100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6560 5' -59.8 NC_001847.1 + 38200 1.11 0.000816
Target:  5'- aCUUUGCCGCCGCUAGCGGCGACCCGCu -3'
miRNA:   3'- -GAAACGGCGGCGAUCGCCGCUGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 134120 0.79 0.136045
Target:  5'- gCUgcgGCgCGCCGCgGGCGGCGGCCUGg -3'
miRNA:   3'- -GAaa-CG-GCGGCGaUCGCCGCUGGGCg -5'
6560 5' -59.8 NC_001847.1 + 34785 0.79 0.146764
Target:  5'- ---gGCCGCgGCgcGCGGCuacGACCCGCg -3'
miRNA:   3'- gaaaCGGCGgCGauCGCCG---CUGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 133360 0.66 0.746536
Target:  5'- --gUGCUGCUGCUcucgacGCGG-GACCUGg -3'
miRNA:   3'- gaaACGGCGGCGAu-----CGCCgCUGGGCg -5'
6560 5' -59.8 NC_001847.1 + 104877 0.84 0.06581
Target:  5'- ---cGCCGCCGCagcggUGGCGGCGAgcgcCCCGCg -3'
miRNA:   3'- gaaaCGGCGGCG-----AUCGCCGCU----GGGCG- -5'
6560 5' -59.8 NC_001847.1 + 55509 0.81 0.102635
Target:  5'- ---gGCCcuGCUGCUGGCGGCG-CCCGCc -3'
miRNA:   3'- gaaaCGG--CGGCGAUCGCCGCuGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 74257 0.81 0.108073
Target:  5'- --cUGCCGCCGCU-GCuGgGGCCCGCg -3'
miRNA:   3'- gaaACGGCGGCGAuCGcCgCUGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 120780 0.81 0.108073
Target:  5'- ---cGaCCGCgCGCUGGCGGCGuucCCCGCa -3'
miRNA:   3'- gaaaC-GGCG-GCGAUCGCCGCu--GGGCG- -5'
6560 5' -59.8 NC_001847.1 + 131710 0.8 0.11674
Target:  5'- ---cGCUGCCGCacGUGGCGGCCUGCg -3'
miRNA:   3'- gaaaCGGCGGCGauCGCCGCUGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 93760 0.79 0.132636
Target:  5'- ---cGCgGCUGCcGGCGGCGGCCCGg -3'
miRNA:   3'- gaaaCGgCGGCGaUCGCCGCUGGGCg -5'
6560 5' -59.8 NC_001847.1 + 120194 0.8 0.122873
Target:  5'- --gUGCUgGCCGCgcgAGCGGCG-CCCGCu -3'
miRNA:   3'- gaaACGG-CGGCGa--UCGCCGCuGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 103418 0.8 0.113489
Target:  5'- ---cGCgGCCGCUccgcagcGGCGcGCGGCCCGCg -3'
miRNA:   3'- gaaaCGgCGGCGA-------UCGC-CGCUGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 76590 0.91 0.022577
Target:  5'- uCUUcGCCGCCGCUGGCGGCGGCgaagaCCGCg -3'
miRNA:   3'- -GAAaCGGCGGCGAUCGCCGCUG-----GGCG- -5'
6560 5' -59.8 NC_001847.1 + 131426 0.8 0.126051
Target:  5'- ---gGCCGCgCGCUAcGCGGCGgccgcgggGCCCGCg -3'
miRNA:   3'- gaaaCGGCG-GCGAU-CGCCGC--------UGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 134157 0.86 0.04787
Target:  5'- --gUGCCGCCGCcGGCGGCGGaagcCCCGCc -3'
miRNA:   3'- gaaACGGCGGCGaUCGCCGCU----GGGCG- -5'
6560 5' -59.8 NC_001847.1 + 90345 0.81 0.110893
Target:  5'- --gUGCCGCgcucggCGCUuucgGGCGGCGACCUGCu -3'
miRNA:   3'- gaaACGGCG------GCGA----UCGCCGCUGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 18946 0.8 0.126051
Target:  5'- ---cGCCGCCGCggcguccgGGCGGCGACgaccagcgcggCCGCg -3'
miRNA:   3'- gaaaCGGCGGCGa-------UCGCCGCUG-----------GGCG- -5'
6560 5' -59.8 NC_001847.1 + 27515 0.79 0.143108
Target:  5'- ---cGCCGCCGCggcGGCGGCGgggacGCCCGa -3'
miRNA:   3'- gaaaCGGCGGCGa--UCGCCGC-----UGGGCg -5'
6560 5' -59.8 NC_001847.1 + 134020 0.85 0.055263
Target:  5'- ---cGCCGCCGCUggugcuggaggccgcGGCGGCGccGCCCGCg -3'
miRNA:   3'- gaaaCGGCGGCGA---------------UCGCCGC--UGGGCG- -5'
6560 5' -59.8 NC_001847.1 + 131974 0.81 0.102635
Target:  5'- --cUGCCGCgaggCGCUGGaGGCGGCCCGCc -3'
miRNA:   3'- gaaACGGCG----GCGAUCgCCGCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.