miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6561 3' -65.2 NC_001847.1 + 39620 1.12 0.000203
Target:  5'- aGCCCCAGGGGCAAGCCUGGCGCGCCCg -3'
miRNA:   3'- -CGGGGUCCCCGUUCGGACCGCGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 134511 0.75 0.116058
Target:  5'- gGCCUCGGGGGCGgggggaggcgcgGGCC--GCGCGCCg -3'
miRNA:   3'- -CGGGGUCCCCGU------------UCGGacCGCGCGGg -5'
6561 3' -65.2 NC_001847.1 + 131153 0.75 0.11898
Target:  5'- cGCCCCGcGGGGCcgcgcGCCcgGGCccccgGCGCCCu -3'
miRNA:   3'- -CGGGGU-CCCCGuu---CGGa-CCG-----CGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 17807 0.66 0.483829
Target:  5'- gGCCgCgGGGGGCgAGGCCgccccccgccgcuaGGU-CGCCCa -3'
miRNA:   3'- -CGG-GgUCCCCG-UUCGGa-------------CCGcGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 5791 0.78 0.07006
Target:  5'- aGCCCCGGGcccGGCAccgcgcuugcGCUUGGCGCGCCg -3'
miRNA:   3'- -CGGGGUCC---CCGUu---------CGGACCGCGCGGg -5'
6561 3' -65.2 NC_001847.1 + 3422 0.78 0.073727
Target:  5'- -gCCCGGGGGC--GCCaGGCGCaGCCCa -3'
miRNA:   3'- cgGGGUCCCCGuuCGGaCCGCG-CGGG- -5'
6561 3' -65.2 NC_001847.1 + 124536 0.77 0.085865
Target:  5'- cGCCagCAGGGcGCGGGCC-GGCGCcgGCCCg -3'
miRNA:   3'- -CGGg-GUCCC-CGUUCGGaCCGCG--CGGG- -5'
6561 3' -65.2 NC_001847.1 + 135055 0.77 0.085865
Target:  5'- -aCCCAGGGGCgGAGCCcagaGCGgGCCCg -3'
miRNA:   3'- cgGGGUCCCCG-UUCGGac--CGCgCGGG- -5'
6561 3' -65.2 NC_001847.1 + 103072 0.76 0.102429
Target:  5'- gGCgCCCAGGGGCccGAGCCcgggGGCcGCcgaGCCCg -3'
miRNA:   3'- -CG-GGGUCCCCG--UUCGGa---CCG-CG---CGGG- -5'
6561 3' -65.2 NC_001847.1 + 114095 0.75 0.114908
Target:  5'- gGCCUCAgggccgggggucucGGGGCAAGCUUGcucgcacGCGCGCUCg -3'
miRNA:   3'- -CGGGGU--------------CCCCGUUCGGAC-------CGCGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 73785 0.76 0.104766
Target:  5'- cGCCUCGccggugcGGGGCu-GCCUgccggugggcuaGGCGCGCCCg -3'
miRNA:   3'- -CGGGGU-------CCCCGuuCGGA------------CCGCGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 111409 0.76 0.09989
Target:  5'- gGCCCCgccAGGGGCGgcgcucGGCCgggGGCggggggaggaGCGCCCu -3'
miRNA:   3'- -CGGGG---UCCCCGU------UCGGa--CCG----------CGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 124919 0.83 0.030644
Target:  5'- cGCgCCGGGGGCGacAGCg-GGCGCGCCCu -3'
miRNA:   3'- -CGgGGUCCCCGU--UCGgaCCGCGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 54579 0.76 0.105029
Target:  5'- gGCCCCGcGGGCugggcGGCgCUGGCggcgcGCGCCCg -3'
miRNA:   3'- -CGGGGUcCCCGu----UCG-GACCG-----CGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 103030 0.81 0.045248
Target:  5'- gGCgCCCGGGGGCccGAGCCcgGGCcucGCGCCCc -3'
miRNA:   3'- -CG-GGGUCCCCG--UUCGGa-CCG---CGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 59840 0.77 0.090318
Target:  5'- cGCCUCGcGGGGCAccGGCCaGGCGCGgUCg -3'
miRNA:   3'- -CGGGGU-CCCCGU--UCGGaCCGCGCgGG- -5'
6561 3' -65.2 NC_001847.1 + 112495 0.76 0.105029
Target:  5'- cGCCCgcccGGGGCAAGCCcgcccuccccGGaCGCGCCCu -3'
miRNA:   3'- -CGGGgu--CCCCGUUCGGa---------CC-GCGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 27147 0.75 0.11898
Target:  5'- cGUCCgGGGGGCGcAGCCgcGGCGgccaGCCCa -3'
miRNA:   3'- -CGGGgUCCCCGU-UCGGa-CCGCg---CGGG- -5'
6561 3' -65.2 NC_001847.1 + 106814 0.79 0.066569
Target:  5'- gGCCCCGcGGGGCGccgGGCCcGGCGCccGCCUc -3'
miRNA:   3'- -CGGGGU-CCCCGU---UCGGaCCGCG--CGGG- -5'
6561 3' -65.2 NC_001847.1 + 8130 0.78 0.075629
Target:  5'- gGCCCCAGGGGCGGGC--GGUGCuGCgCg -3'
miRNA:   3'- -CGGGGUCCCCGUUCGgaCCGCG-CGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.