miRNA display CGI


Results 1 - 20 of 253 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6561 5' -55.7 NC_001847.1 + 63206 0.66 0.884501
Target:  5'- uGCGGcGCGGCGCcguuuacgcgUGCGCGc-- -3'
miRNA:   3'- -UGCC-CGCCGCGuuuaua----ACGCGCcuu -5'
6561 5' -55.7 NC_001847.1 + 43113 0.66 0.884501
Target:  5'- gGCGccGGCGGUGCccgcagacgGCGCGGGc -3'
miRNA:   3'- -UGC--CCGCCGCGuuuauaa--CGCGCCUu -5'
6561 5' -55.7 NC_001847.1 + 33679 0.66 0.883788
Target:  5'- cGCGGGgcuagaGGCGCAGGcgcucgcgGCGCGGc- -3'
miRNA:   3'- -UGCCCg-----CCGCGUUUauaa----CGCGCCuu -5'
6561 5' -55.7 NC_001847.1 + 97000 0.66 0.883788
Target:  5'- -gGGGCGGCGCGcc----GCGCGa-- -3'
miRNA:   3'- ugCCCGCCGCGUuuauaaCGCGCcuu -5'
6561 5' -55.7 NC_001847.1 + 83272 0.66 0.883788
Target:  5'- -gGGGCgGGCGCAGAg---GCGCa--- -3'
miRNA:   3'- ugCCCG-CCGCGUUUauaaCGCGccuu -5'
6561 5' -55.7 NC_001847.1 + 29678 0.66 0.883788
Target:  5'- aACGGcGUGGCGCAGcugAUgGCGCuGAu -3'
miRNA:   3'- -UGCC-CGCCGCGUUua-UAaCGCGcCUu -5'
6561 5' -55.7 NC_001847.1 + 54765 0.66 0.883788
Target:  5'- uACGuGGCGGUGCAuAAUGgguuUUGCGCa--- -3'
miRNA:   3'- -UGC-CCGCCGCGU-UUAU----AACGCGccuu -5'
6561 5' -55.7 NC_001847.1 + 132225 0.66 0.883788
Target:  5'- cGCuGGCGGCGCGGaccGUGgccccgcucGCGCGGu- -3'
miRNA:   3'- -UGcCCGCCGCGUU---UAUaa-------CGCGCCuu -5'
6561 5' -55.7 NC_001847.1 + 69111 0.66 0.883788
Target:  5'- gGCGGGCcgcguucucGGCGUAcGUGgucuuugGCGCGGc- -3'
miRNA:   3'- -UGCCCG---------CCGCGUuUAUaa-----CGCGCCuu -5'
6561 5' -55.7 NC_001847.1 + 86381 0.66 0.883788
Target:  5'- gGCGGGCcGCgGCGGcgGgcGCGCGGc- -3'
miRNA:   3'- -UGCCCGcCG-CGUUuaUaaCGCGCCuu -5'
6561 5' -55.7 NC_001847.1 + 97888 0.66 0.883788
Target:  5'- --cGGCGGCGCGGAUGgcgaacaGCGCGc-- -3'
miRNA:   3'- ugcCCGCCGCGUUUAUaa-----CGCGCcuu -5'
6561 5' -55.7 NC_001847.1 + 27916 0.66 0.883788
Target:  5'- -gGGGCggagGGCGCGGAg---GaCGCGGAc -3'
miRNA:   3'- ugCCCG----CCGCGUUUauaaC-GCGCCUu -5'
6561 5' -55.7 NC_001847.1 + 57995 0.66 0.883788
Target:  5'- cGCGguGGCGGCGCAGGcg--GCgGCGGu- -3'
miRNA:   3'- -UGC--CCGCCGCGUUUauaaCG-CGCCuu -5'
6561 5' -55.7 NC_001847.1 + 29412 0.66 0.883788
Target:  5'- cGCuGGCGGCGCGGaccGUGgccccgcucGCGCGGu- -3'
miRNA:   3'- -UGcCCGCCGCGUU---UAUaa-------CGCGCCuu -5'
6561 5' -55.7 NC_001847.1 + 115692 0.66 0.883073
Target:  5'- gGCGGaGCGGCuggcccgGCAGcgGgcGCGCGGc- -3'
miRNA:   3'- -UGCC-CGCCG-------CGUUuaUaaCGCGCCuu -5'
6561 5' -55.7 NC_001847.1 + 128189 0.66 0.881635
Target:  5'- -gGGGCGGCgGCAGGgcggagggggacCGCGGAAg -3'
miRNA:   3'- ugCCCGCCG-CGUUUauaac-------GCGCCUU- -5'
6561 5' -55.7 NC_001847.1 + 25376 0.66 0.881635
Target:  5'- -gGGGCGGCgGCAGGgcggagggggacCGCGGAAg -3'
miRNA:   3'- ugCCCGCCG-CGUUUauaac-------GCGCCUU- -5'
6561 5' -55.7 NC_001847.1 + 57516 0.66 0.880913
Target:  5'- cACGGGCGGCGCGccguccucGCccaGCGGc- -3'
miRNA:   3'- -UGCCCGCCGCGUuuauaa--CG---CGCCuu -5'
6561 5' -55.7 NC_001847.1 + 8091 0.66 0.878732
Target:  5'- cGCGGcgagaucggcgacGCGGCGCcagcgcagGCGCGGGg -3'
miRNA:   3'- -UGCC-------------CGCCGCGuuuauaa-CGCGCCUu -5'
6561 5' -55.7 NC_001847.1 + 69345 0.66 0.87653
Target:  5'- uGCuGGCGGCGCuGGUGcuggcgcGCGCGGc- -3'
miRNA:   3'- -UGcCCGCCGCGuUUAUaa-----CGCGCCuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.