miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 3' -61.7 NC_001847.1 + 4978 0.66 0.558555
Target:  5'- -gGGgcagcugGGGUGCGGCggccgcggcaaaGCGCGgcgGcGGCGg -3'
miRNA:   3'- aaCCa------UCCACGCCGa-----------CGCGCa--C-CCGC- -5'
6562 3' -61.7 NC_001847.1 + 117472 0.67 0.550664
Target:  5'- cUGGc-GGUGCGcgccuggaGCUcugguuucaGCGCGUGGGCa -3'
miRNA:   3'- aACCauCCACGC--------CGA---------CGCGCACCCGc -5'
6562 3' -61.7 NC_001847.1 + 95151 0.67 0.540849
Target:  5'- cUUGG-GGGUGcCGGCaugGCGgG-GGGCGc -3'
miRNA:   3'- -AACCaUCCAC-GCCGa--CGCgCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 118754 0.67 0.540849
Target:  5'- --------cGCGGCUGCGCGagcGGGCGa -3'
miRNA:   3'- aaccauccaCGCCGACGCGCa--CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 102692 0.67 0.539871
Target:  5'- cUGGcGGGcgugugcUGCGGCaGCGCcUGGGCc -3'
miRNA:   3'- aACCaUCC-------ACGCCGaCGCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 61778 0.67 0.531093
Target:  5'- -cGGU-GGcGCGG-UGCGgGUGGGCc -3'
miRNA:   3'- aaCCAuCCaCGCCgACGCgCACCCGc -5'
6562 3' -61.7 NC_001847.1 + 128036 0.67 0.518508
Target:  5'- -aGGUGGGcUGCGGCuUGCauGCaagcacacgggauaGUGGGCu -3'
miRNA:   3'- aaCCAUCC-ACGCCG-ACG--CG--------------CACCCGc -5'
6562 3' -61.7 NC_001847.1 + 25223 0.67 0.518508
Target:  5'- -aGGUGGGcUGCGGCuUGCauGCaagcacacgggauaGUGGGCu -3'
miRNA:   3'- aaCCAUCC-ACGCCG-ACG--CG--------------CACCCGc -5'
6562 3' -61.7 NC_001847.1 + 59032 0.67 0.517544
Target:  5'- gUGGcGGGUGCGGCgGCGgaggagaguggugGUGaGGCGg -3'
miRNA:   3'- aACCaUCCACGCCGaCGCg------------CAC-CCGC- -5'
6562 3' -61.7 NC_001847.1 + 134767 0.67 0.51178
Target:  5'- -cGGUccGGcGcGCGGC-GCGCG-GGGCGg -3'
miRNA:   3'- aaCCA--UC-CaCGCCGaCGCGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 87872 0.67 0.51178
Target:  5'- gUGGUcGcUGUGGCcGCGCGgcuuucUGGGCGg -3'
miRNA:   3'- aACCAuCcACGCCGaCGCGC------ACCCGC- -5'
6562 3' -61.7 NC_001847.1 + 121191 0.67 0.51178
Target:  5'- ----cGGGaGCGGCacuUGCGCG-GGGCGg -3'
miRNA:   3'- aaccaUCCaCGCCG---ACGCGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 26966 0.67 0.51178
Target:  5'- gUUGGaaaugAGGUGCGcGCgcaGCGCGUcuGcGGCGg -3'
miRNA:   3'- -AACCa----UCCACGC-CGa--CGCGCA--C-CCGC- -5'
6562 3' -61.7 NC_001847.1 + 31954 0.67 0.51178
Target:  5'- -cGGUccGGcGcGCGGC-GCGCG-GGGCGg -3'
miRNA:   3'- aaCCA--UC-CaCGCCGaCGCGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 73231 0.67 0.51178
Target:  5'- -aGGaGGGggGCGGCgGCGCG-GGcGCGc -3'
miRNA:   3'- aaCCaUCCa-CGCCGaCGCGCaCC-CGC- -5'
6562 3' -61.7 NC_001847.1 + 125797 0.67 0.502232
Target:  5'- -gGGUGGGcUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aaCCAUCC-ACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 74782 0.67 0.502232
Target:  5'- cUGGcgaAGGUGUgcacguucgacgGGCccucgguagUGCGUGUGGGCGa -3'
miRNA:   3'- aACCa--UCCACG------------CCG---------ACGCGCACCCGC- -5'
6562 3' -61.7 NC_001847.1 + 69444 0.67 0.502232
Target:  5'- -cGGUGGcGgacgGCGGCgcgcGCGCGgcgGcGGCGg -3'
miRNA:   3'- aaCCAUC-Ca---CGCCGa---CGCGCa--C-CCGC- -5'
6562 3' -61.7 NC_001847.1 + 22984 0.67 0.502232
Target:  5'- -gGGUGGGcUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aaCCAUCC-ACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 42721 0.68 0.483378
Target:  5'- uUUGGcgcGGcggGCGGCcGCGCGggcggcgGGGCGg -3'
miRNA:   3'- -AACCau-CCa--CGCCGaCGCGCa------CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.