miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6563 3' -66.1 NC_001847.1 + 70669 0.65 0.474317
Target:  5'- uGUGCUCCCUGcuucGGcCCCCCgcgccgccgcgggCGGCGg -3'
miRNA:   3'- gCGCGGGGGGUu---CCaGGGGGa------------GCCGC- -5'
6563 3' -66.1 NC_001847.1 + 12282 0.66 0.472556
Target:  5'- aGCGCgCCCCGgaaggGGGUgCCCCgcaagacuacuugaCGGCc -3'
miRNA:   3'- gCGCGgGGGGU-----UCCAgGGGGa-------------GCCGc -5'
6563 3' -66.1 NC_001847.1 + 632 0.66 0.469045
Target:  5'- cCGCGCCUCCCcccg-CCCCCgaGGCc -3'
miRNA:   3'- -GCGCGGGGGGuuccaGGGGGagCCGc -5'
6563 3' -66.1 NC_001847.1 + 119677 0.66 0.469045
Target:  5'- gGCgGCCCCCCAGGa---CCCgaaGGCGa -3'
miRNA:   3'- gCG-CGGGGGGUUCcaggGGGag-CCGC- -5'
6563 3' -66.1 NC_001847.1 + 60987 0.66 0.469045
Target:  5'- gCGCGCCCacggcgccgUCGAGG-CCgCCaUCGGCGc -3'
miRNA:   3'- -GCGCGGGg--------GGUUCCaGGgGG-AGCCGC- -5'
6563 3' -66.1 NC_001847.1 + 103445 0.66 0.469045
Target:  5'- cCGCGCCUCCCcccg-CCCCCgaGGCc -3'
miRNA:   3'- -GCGCGGGGGGuuccaGGGGGagCCGc -5'
6563 3' -66.1 NC_001847.1 + 101261 0.66 0.469045
Target:  5'- gGCGCUCCCCuc-GUCCCuCCUCacuGCc -3'
miRNA:   3'- gCGCGGGGGGuucCAGGG-GGAGc--CGc -5'
6563 3' -66.1 NC_001847.1 + 106472 0.66 0.469045
Target:  5'- aGCGCCgcguacugcuuCCCCGc-GUCCCCCaucucCGGCa -3'
miRNA:   3'- gCGCGG-----------GGGGUucCAGGGGGa----GCCGc -5'
6563 3' -66.1 NC_001847.1 + 45141 0.66 0.469045
Target:  5'- gGCGCCUUCUgcGGGGUgcagCCCCgCGGCGc -3'
miRNA:   3'- gCGCGGGGGG--UUCCAg---GGGGaGCCGC- -5'
6563 3' -66.1 NC_001847.1 + 3659 0.66 0.469045
Target:  5'- aGCGCCgcguacugcuuCCCCGc-GUCCCCCaucucCGGCa -3'
miRNA:   3'- gCGCGG-----------GGGGUucCAGGGGGa----GCCGc -5'
6563 3' -66.1 NC_001847.1 + 31913 0.66 0.460325
Target:  5'- cCGcCGCCCgCCCGccccGGG-CCCCgguCUCGGuCGg -3'
miRNA:   3'- -GC-GCGGG-GGGU----UCCaGGGG---GAGCC-GC- -5'
6563 3' -66.1 NC_001847.1 + 35939 0.66 0.460325
Target:  5'- gCGCGCCgCCgCGcGG-CCgCCUCGcGCGa -3'
miRNA:   3'- -GCGCGGgGG-GUuCCaGGgGGAGC-CGC- -5'
6563 3' -66.1 NC_001847.1 + 34128 0.66 0.460325
Target:  5'- gGCGCCUgCCGcGGUggCCgCCgCGGCGa -3'
miRNA:   3'- gCGCGGGgGGUuCCA--GGgGGaGCCGC- -5'
6563 3' -66.1 NC_001847.1 + 11312 0.66 0.460325
Target:  5'- gCGCGCCCgCCGAGG-CCggCgggCGGCu -3'
miRNA:   3'- -GCGCGGGgGGUUCCaGGggGa--GCCGc -5'
6563 3' -66.1 NC_001847.1 + 83086 0.66 0.455136
Target:  5'- gGUGCCCgCCCAcaccuccgggcGGGccUCCgccucgcguagcaccUCCUCGGCGg -3'
miRNA:   3'- gCGCGGG-GGGU-----------UCC--AGG---------------GGGAGCCGC- -5'
6563 3' -66.1 NC_001847.1 + 101615 0.66 0.451693
Target:  5'- gGCGCCCgcgCCCGGcG-CCUCCgCGGCGg -3'
miRNA:   3'- gCGCGGG---GGGUUcCaGGGGGaGCCGC- -5'
6563 3' -66.1 NC_001847.1 + 44821 0.66 0.451693
Target:  5'- uGCGCCCCC---GG-CCCCggCGGCc -3'
miRNA:   3'- gCGCGGGGGguuCCaGGGGgaGCCGc -5'
6563 3' -66.1 NC_001847.1 + 40610 0.66 0.451693
Target:  5'- aGCGCUCgCCCu---UUCCCCUCGGUc -3'
miRNA:   3'- gCGCGGG-GGGuuccAGGGGGAGCCGc -5'
6563 3' -66.1 NC_001847.1 + 39891 0.66 0.451693
Target:  5'- uCGCGCCCCCgAucGcgCCCCCgaUCGcGCc -3'
miRNA:   3'- -GCGCGGGGGgUucCa-GGGGG--AGC-CGc -5'
6563 3' -66.1 NC_001847.1 + 8300 0.66 0.451693
Target:  5'- aGgGCUCCCCGGGGggCCaggCUgUCGGCa -3'
miRNA:   3'- gCgCGGGGGGUUCCa-GG---GGgAGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.