miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6563 5' -56.1 NC_001847.1 + 120317 0.65 0.903987
Target:  5'- gGCCgGCUGAUuuuccuggaacaccAGCUCCCggccGGGCGGc-- -3'
miRNA:   3'- -CGG-UGGCUA--------------UCGAGGGa---CCUGCCuuc -5'
6563 5' -56.1 NC_001847.1 + 57562 0.66 0.899535
Target:  5'- uGCCGCCGugcgAGCUcggCCCgcgcGGccGCGGAAa -3'
miRNA:   3'- -CGGUGGCua--UCGA---GGGa---CC--UGCCUUc -5'
6563 5' -56.1 NC_001847.1 + 132415 0.66 0.899535
Target:  5'- cCCGCCcugcGCUCCgUGGugGGGcAGg -3'
miRNA:   3'- cGGUGGcuauCGAGGgACCugCCU-UC- -5'
6563 5' -56.1 NC_001847.1 + 45481 0.66 0.899535
Target:  5'- gGCCAuguCCGAgauUAGCaaacgCCCgGGGCGGGc- -3'
miRNA:   3'- -CGGU---GGCU---AUCGa----GGGaCCUGCCUuc -5'
6563 5' -56.1 NC_001847.1 + 114904 0.66 0.899535
Target:  5'- cGCgCGCgGGggcgAGC-CCCUGGggcACGGggGc -3'
miRNA:   3'- -CG-GUGgCUa---UCGaGGGACC---UGCCuuC- -5'
6563 5' -56.1 NC_001847.1 + 43380 0.66 0.899535
Target:  5'- cGCCGCCGAcggAGCgCCCgcGGACcGAu- -3'
miRNA:   3'- -CGGUGGCUa--UCGaGGGa-CCUGcCUuc -5'
6563 5' -56.1 NC_001847.1 + 83454 0.66 0.896939
Target:  5'- aCCACUGGggguugggcgucgGGCUCCC-GGGCGGc-- -3'
miRNA:   3'- cGGUGGCUa------------UCGAGGGaCCUGCCuuc -5'
6563 5' -56.1 NC_001847.1 + 88807 0.66 0.886188
Target:  5'- uGCCGCCGAc-GCggCCCgcGGGCGGccGu -3'
miRNA:   3'- -CGGUGGCUauCGa-GGGa-CCUGCCuuC- -5'
6563 5' -56.1 NC_001847.1 + 29643 0.66 0.879174
Target:  5'- gGgCGCCGcgGGCggaCCCggaGGACGGGu- -3'
miRNA:   3'- -CgGUGGCuaUCGa--GGGa--CCUGCCUuc -5'
6563 5' -56.1 NC_001847.1 + 132456 0.66 0.879174
Target:  5'- gGgCGCCGcgGGCggaCCCggaGGACGGGu- -3'
miRNA:   3'- -CgGUGGCuaUCGa--GGGa--CCUGCCUuc -5'
6563 5' -56.1 NC_001847.1 + 90615 0.66 0.871939
Target:  5'- cGgCACCGcgAGCUCgC-GGACGGcGGc -3'
miRNA:   3'- -CgGUGGCuaUCGAGgGaCCUGCCuUC- -5'
6563 5' -56.1 NC_001847.1 + 53795 0.66 0.871939
Target:  5'- aGCCGCCGcgAggaggucugcGCcCCCUGGcgcgccggaGCGGggGc -3'
miRNA:   3'- -CGGUGGCuaU----------CGaGGGACC---------UGCCuuC- -5'
6563 5' -56.1 NC_001847.1 + 13889 0.66 0.871939
Target:  5'- uGCCGCUGGUGcgcccgguGUUCCUggUGGAguucCGGGAGg -3'
miRNA:   3'- -CGGUGGCUAU--------CGAGGG--ACCU----GCCUUC- -5'
6563 5' -56.1 NC_001847.1 + 70068 0.67 0.864487
Target:  5'- cGCCGCCGA-AGCg--CUGGgacugcucGCGGAGGa -3'
miRNA:   3'- -CGGUGGCUaUCGaggGACC--------UGCCUUC- -5'
6563 5' -56.1 NC_001847.1 + 102659 0.67 0.864487
Target:  5'- -gCGCCGggAGCggCCgcgaGGGCGGggGg -3'
miRNA:   3'- cgGUGGCuaUCGagGGa---CCUGCCuuC- -5'
6563 5' -56.1 NC_001847.1 + 43554 0.67 0.864487
Target:  5'- cGCCGCCGcgAGCgCCgCgaGGAUGGccGAGg -3'
miRNA:   3'- -CGGUGGCuaUCGaGG-Ga-CCUGCC--UUC- -5'
6563 5' -56.1 NC_001847.1 + 81236 0.67 0.864487
Target:  5'- cGCCuCCGGgcggGGCcgUCgCgaGGACGGggGg -3'
miRNA:   3'- -CGGuGGCUa---UCG--AG-GgaCCUGCCuuC- -5'
6563 5' -56.1 NC_001847.1 + 95628 0.67 0.848958
Target:  5'- aCCGCUG-UGGCgggccgCUCUGGcGCGGggGg -3'
miRNA:   3'- cGGUGGCuAUCGa-----GGGACC-UGCCuuC- -5'
6563 5' -56.1 NC_001847.1 + 132013 0.67 0.848958
Target:  5'- cGCCGCCG--GGCUCCC-GGugcucucggccGCGGcGGg -3'
miRNA:   3'- -CGGUGGCuaUCGAGGGaCC-----------UGCCuUC- -5'
6563 5' -56.1 NC_001847.1 + 108608 0.67 0.848958
Target:  5'- cGCgCGCCGAaaacguGCUCCgggGGACGGcGGg -3'
miRNA:   3'- -CG-GUGGCUau----CGAGGga-CCUGCCuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.