Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6566 | 3' | -54.7 | NC_001847.1 | + | 41658 | 1.11 | 0.002432 |
Target: 5'- cCGCGAGAAGUACCCCUGGAAGAGCACg -3' miRNA: 3'- -GCGCUCUUCAUGGGGACCUUCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 115479 | 0.82 | 0.184616 |
Target: 5'- gCGCGGGcacgucuGGGcuUGCCCCUGGAAGGGCGCc -3' miRNA: 3'- -GCGCUC-------UUC--AUGGGGACCUUCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 53800 | 0.76 | 0.415889 |
Target: 5'- cCGCGAGGAGgucugcgcCCCCUGGcgcgccggagcGGGGGCGCu -3' miRNA: 3'- -GCGCUCUUCau------GGGGACC-----------UUCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 56042 | 0.75 | 0.461903 |
Target: 5'- cCGCGAcGAcg-ACCCCUGGGAG-GCGCc -3' miRNA: 3'- -GCGCU-CUucaUGGGGACCUUCuCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 77663 | 0.74 | 0.530481 |
Target: 5'- aCGCGGgcgccGAGGUACUgCUGGccGAGCGCu -3' miRNA: 3'- -GCGCU-----CUUCAUGGgGACCuuCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 132729 | 0.73 | 0.55078 |
Target: 5'- cCGCGGGG---GCCCCUcGGggGAGgACg -3' miRNA: 3'- -GCGCUCUucaUGGGGA-CCuuCUCgUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 130199 | 0.73 | 0.581646 |
Target: 5'- gCGCGAuagcGAGGUugCUC-GGggGGGCGCu -3' miRNA: 3'- -GCGCU----CUUCAugGGGaCCuuCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 27386 | 0.73 | 0.581646 |
Target: 5'- gCGCGAuagcGAGGUugCUC-GGggGGGCGCu -3' miRNA: 3'- -GCGCU----CUUCAugGGGaCCuuCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 54456 | 0.73 | 0.59202 |
Target: 5'- gGCGGGGAcGaGCCCgaGGAGGAGgGCg -3' miRNA: 3'- gCGCUCUU-CaUGGGgaCCUUCUCgUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 12701 | 0.72 | 0.64419 |
Target: 5'- gGCGGGGugcaggcaggccGGUGCCUCggggUGGAAGAuGCACg -3' miRNA: 3'- gCGCUCU------------UCAUGGGG----ACCUUCU-CGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 32344 | 0.72 | 0.64419 |
Target: 5'- gCGCgGAGggGgcccaGCCCCcgcgcGGggGGGCGCc -3' miRNA: 3'- -GCG-CUCuuCa----UGGGGa----CCuuCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 114907 | 0.72 | 0.654627 |
Target: 5'- gCGCGGGGGcGaGCCCCUGG---GGCACg -3' miRNA: 3'- -GCGCUCUU-CaUGGGGACCuucUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 80960 | 0.71 | 0.696101 |
Target: 5'- cCGCGAGcgcgcggucaAAGUGCUCCggGGAgcggccaaAGAGCGCc -3' miRNA: 3'- -GCGCUC----------UUCAUGGGGa-CCU--------UCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 108856 | 0.7 | 0.71654 |
Target: 5'- gGCGGGAGG-ACCCCggcGGu-GAGCAa -3' miRNA: 3'- gCGCUCUUCaUGGGGa--CCuuCUCGUg -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 76413 | 0.7 | 0.71654 |
Target: 5'- cCGCGgcGGggGcACCCCgcGGcGGGAGCGCg -3' miRNA: 3'- -GCGC--UCuuCaUGGGGa-CC-UUCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 6043 | 0.7 | 0.71654 |
Target: 5'- gGCGGGAGG-ACCCCggcGGu-GAGCAa -3' miRNA: 3'- gCGCUCUUCaUGGGGa--CCuuCUCGUg -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 100671 | 0.7 | 0.726652 |
Target: 5'- gGCGGGggGU-CCCCaGGAGGcuuucucGCACc -3' miRNA: 3'- gCGCUCuuCAuGGGGaCCUUCu------CGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 59292 | 0.7 | 0.736679 |
Target: 5'- gGCGGGAAaccGUACCCa-GGGugccAGGGCGCg -3' miRNA: 3'- gCGCUCUU---CAUGGGgaCCU----UCUCGUG- -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 29916 | 0.7 | 0.756438 |
Target: 5'- cCGCGGGggG--CCCCUcGGggGAGgAg -3' miRNA: 3'- -GCGCUCuuCauGGGGA-CCuuCUCgUg -5' |
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6566 | 3' | -54.7 | NC_001847.1 | + | 133181 | 0.7 | 0.756438 |
Target: 5'- gCGCGGGcgcGGGcUGCCCucgCUGGAGGAGCu- -3' miRNA: 3'- -GCGCUC---UUC-AUGGG---GACCUUCUCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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