miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6566 3' -54.7 NC_001847.1 + 90846 0.67 0.884988
Target:  5'- aGCGAGcGGcGCCCCgGGGccGGGGCu- -3'
miRNA:   3'- gCGCUCuUCaUGGGGaCCU--UCUCGug -5'
6566 3' -54.7 NC_001847.1 + 67641 0.67 0.884988
Target:  5'- cCGCGAcc-GUGCCCUcgucGAGGGGCGCg -3'
miRNA:   3'- -GCGCUcuuCAUGGGGac--CUUCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 59768 0.67 0.884988
Target:  5'- aCGCGAGAcGGUGuCCCaCUugucccGGAcGAGCAUg -3'
miRNA:   3'- -GCGCUCU-UCAU-GGG-GA------CCUuCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 118647 0.67 0.88428
Target:  5'- uGCGAGuuaaaccGAGUGCCCCacccaGGcAGGGCGg -3'
miRNA:   3'- gCGCUC-------UUCAUGGGGa----CCuUCUCGUg -5'
6566 3' -54.7 NC_001847.1 + 8600 0.67 0.882858
Target:  5'- gCGCGAGc-GUcagccgcagcgcaaGCCCCgccGGggGAGCGg -3'
miRNA:   3'- -GCGCUCuuCA--------------UGGGGa--CCuuCUCGUg -5'
6566 3' -54.7 NC_001847.1 + 133968 0.67 0.877806
Target:  5'- aGCGAGAuaagGCgCCgGGGcugGGAGCGCg -3'
miRNA:   3'- gCGCUCUuca-UGgGGaCCU---UCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 134783 0.67 0.870397
Target:  5'- gCGCGGGgcGgGCCCCggggcgcgaagcccgGGAgggacgcgggcguGGAGCGCg -3'
miRNA:   3'- -GCGCUCuuCaUGGGGa--------------CCU-------------UCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 71783 0.67 0.870397
Target:  5'- gGaCGAGuacacAGUgccgcacgcGCCCCUGGGcggcgagcaGGAGCACg -3'
miRNA:   3'- gC-GCUCu----UCA---------UGGGGACCU---------UCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 31970 0.67 0.870397
Target:  5'- gCGCGGGgcGgGCCCCggggcgcgaagcccgGGAgggacgcgggcguGGAGCGCg -3'
miRNA:   3'- -GCGCUCuuCaUGGGGa--------------CCU-------------UCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 66622 0.68 0.854914
Target:  5'- gGCGAGGAcgAUCCCgacGGcGGGGGCGCg -3'
miRNA:   3'- gCGCUCUUcaUGGGGa--CC-UUCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 32870 0.68 0.846854
Target:  5'- gCGCGAGAuccUGgCgCUGGAGG-GCACg -3'
miRNA:   3'- -GCGCUCUuc-AUgGgGACCUUCuCGUG- -5'
6566 3' -54.7 NC_001847.1 + 103583 0.68 0.838591
Target:  5'- aCGCGuAGAGG-GCCCUcGGggGcauGCGCg -3'
miRNA:   3'- -GCGC-UCUUCaUGGGGaCCuuCu--CGUG- -5'
6566 3' -54.7 NC_001847.1 + 90747 0.68 0.838591
Target:  5'- gCGCGuGGccggGCCCCgGGAgcgGGAGCGCc -3'
miRNA:   3'- -GCGCuCUuca-UGGGGaCCU---UCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 132991 0.68 0.838591
Target:  5'- uGCGAGAccuGGUGCUgcgcagcgcaaaCCUGGuAGAcGCACu -3'
miRNA:   3'- gCGCUCU---UCAUGG------------GGACCuUCU-CGUG- -5'
6566 3' -54.7 NC_001847.1 + 70275 0.68 0.838591
Target:  5'- cCGCGAGGAcGcGCgCCUGGcGGGGuCGCg -3'
miRNA:   3'- -GCGCUCUU-CaUGgGGACCuUCUC-GUG- -5'
6566 3' -54.7 NC_001847.1 + 94631 0.68 0.833539
Target:  5'- gGCGAGcugcucaaaacacucGAGUACggccugCCCgugacGGAAGAGCACc -3'
miRNA:   3'- gCGCUC---------------UUCAUG------GGGa----CCUUCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 83927 0.68 0.830133
Target:  5'- cCGCGAGcAGgGCCCgCUcGAAGuGCGCg -3'
miRNA:   3'- -GCGCUCuUCaUGGG-GAcCUUCuCGUG- -5'
6566 3' -54.7 NC_001847.1 + 34661 0.68 0.830133
Target:  5'- gCGcCGAGggGgcgGCCgCgcagcggcaGGAGGAGCGCu -3'
miRNA:   3'- -GC-GCUCuuCa--UGGgGa--------CCUUCUCGUG- -5'
6566 3' -54.7 NC_001847.1 + 13872 0.68 0.830133
Target:  5'- gGCGAGggGgggcGCCUUUGGccGGGAGCcCa -3'
miRNA:   3'- gCGCUCuuCa---UGGGGACC--UUCUCGuG- -5'
6566 3' -54.7 NC_001847.1 + 95524 0.68 0.821486
Target:  5'- gCGCGccAGGcuUGCCCCUGGGgcuGGGGcCGCg -3'
miRNA:   3'- -GCGC--UCUucAUGGGGACCU---UCUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.