Results 41 - 60 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 37034 | 0.66 | 0.401855 |
Target: 5'- gGCGCCgggcucgcacuCUAGCcUGG-GCUGGGGgCGg -3' miRNA: 3'- gCGCGG-----------GGUCGcACCgCGACCCCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 37324 | 0.66 | 0.401855 |
Target: 5'- gCGCGCCgagcaCAGCGcUGGCGUgcggucaugcgGcGGGUCGa -3' miRNA: 3'- -GCGCGGg----GUCGC-ACCGCGa----------C-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 45856 | 0.66 | 0.401855 |
Target: 5'- uCGCGCUCUucgccGCcggGGUucaGCUGGGGCCc -3' miRNA: 3'- -GCGCGGGGu----CGca-CCG---CGACCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 46509 | 0.66 | 0.401855 |
Target: 5'- aGCGUUgCCAGCGgcaGCGCUcgGGGGgCGg -3' miRNA: 3'- gCGCGG-GGUCGCac-CGCGA--CCCCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 32187 | 0.66 | 0.401855 |
Target: 5'- gGCcCCCCGGCcggGGCccgaggcccGCgggcGGGGCCGg -3' miRNA: 3'- gCGcGGGGUCGca-CCG---------CGa---CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 75830 | 0.66 | 0.393103 |
Target: 5'- gGCGCCgCCGGCGccgcgccUGGCaccCUGGGuaCGg -3' miRNA: 3'- gCGCGG-GGUCGC-------ACCGc--GACCCcgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 108620 | 0.66 | 0.389166 |
Target: 5'- aCGUGCUCCGGgGgacggcgGGCgacgcugcagaagugGCcGGGGCCGc -3' miRNA: 3'- -GCGCGGGGUCgCa------CCG---------------CGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 126527 | 0.66 | 0.363089 |
Target: 5'- cCGCucCCCCGGCGgggcuuGCGCUGcGGCUGa -3' miRNA: 3'- -GCGc-GGGGUCGCac----CGCGACcCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 122379 | 0.66 | 0.370632 |
Target: 5'- aGCGCgUCCAGCGacaUcugcgcgaagaaGGCGCU-GGGCCGc -3' miRNA: 3'- gCGCG-GGGUCGC---A------------CCGCGAcCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29981 | 0.66 | 0.370632 |
Target: 5'- aCGCGgCCgGGCc-GGCGCggcGGGaGCCGc -3' miRNA: 3'- -GCGCgGGgUCGcaCCGCGa--CCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 44329 | 0.66 | 0.370632 |
Target: 5'- gGUGCCCgCcgGGCGUGauuaacGCGCgcccGGGGCUGc -3' miRNA: 3'- gCGCGGG-G--UCGCAC------CGCGa---CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 28431 | 0.66 | 0.373679 |
Target: 5'- gGCGCCCgcgcuggcuacgccgCGGCGccGCGCgacGGGCCGc -3' miRNA: 3'- gCGCGGG---------------GUCGCacCGCGac-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29188 | 0.66 | 0.375208 |
Target: 5'- cCGCGCCgCCGGCGccgccgggcucccGGUGCUcucggccgcgGcGGGCCGc -3' miRNA: 3'- -GCGCGG-GGUCGCa------------CCGCGA----------C-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 116428 | 0.66 | 0.378281 |
Target: 5'- gCGCGCUUgGGCucgagGGCGgUGGGcGCUGg -3' miRNA: 3'- -GCGCGGGgUCGca---CCGCgACCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 5436 | 0.66 | 0.378281 |
Target: 5'- uCGCucCCCCuGCGUguugcccgacGGCGgUGGcGGCCGc -3' miRNA: 3'- -GCGc-GGGGuCGCA----------CCGCgACC-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 45048 | 0.66 | 0.38137 |
Target: 5'- aGCGCCCCccGCgGUGGCGUcccagagccaguauuUGuuGGCCGa -3' miRNA: 3'- gCGCGGGGu-CG-CACCGCG---------------ACc-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 86997 | 0.66 | 0.386035 |
Target: 5'- gCGCGCgCCGGCccGGCGgUuaccuGGGCCGc -3' miRNA: 3'- -GCGCGgGGUCGcaCCGCgAc----CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 3138 | 0.66 | 0.386035 |
Target: 5'- cCGgGagCCCGGCGgcgccggcGGCGCgGcGGGCCGc -3' miRNA: 3'- -GCgCg-GGGUCGCa-------CCGCGaC-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 31249 | 0.66 | 0.386035 |
Target: 5'- cCGCgGCgCCCGGCGUGGa-CUGGGacGCgGa -3' miRNA: 3'- -GCG-CG-GGGUCGCACCgcGACCC--CGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 51558 | 0.66 | 0.386035 |
Target: 5'- gGCGCagcucgCCAGCGcuuccgcGGCGCcGGGGCa- -3' miRNA: 3'- gCGCGg-----GGUCGCa------CCGCGaCCCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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