miRNA display CGI


Results 61 - 80 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 45048 0.66 0.38137
Target:  5'- aGCGCCCCccGCgGUGGCGUcccagagccaguauuUGuuGGCCGa -3'
miRNA:   3'- gCGCGGGGu-CG-CACCGCG---------------ACc-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 14308 0.66 0.363089
Target:  5'- uCGCgGCCCCGcucccGC-UGcucGCGgUGGGGCCGg -3'
miRNA:   3'- -GCG-CGGGGU-----CGcAC---CGCgACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 66688 0.66 0.363089
Target:  5'- gGgGCCCCGGCcgcgGGCGC-GGaccucugcGGCCGc -3'
miRNA:   3'- gCgCGGGGUCGca--CCGCGaCC--------CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 23431 0.66 0.363089
Target:  5'- gGCGUCCggggucguCGGCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- gCGCGGG--------GUCGCaCCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 104517 0.66 0.362341
Target:  5'- gGCgGCCgCC-GCGUuugcGGCGCUgcgcggcggccccGGGGCCGc -3'
miRNA:   3'- gCG-CGG-GGuCGCA----CCGCGA-------------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 126244 0.66 0.363089
Target:  5'- gGCGUCCggggucguCGGCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- gCGCGGG--------GUCGCaCCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 134254 0.66 0.363089
Target:  5'- gGCGgCCgCGGCGgccccGGCGC--GGGCCGc -3'
miRNA:   3'- gCGCgGG-GUCGCa----CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 45805 0.66 0.363089
Target:  5'- gCGCGCaaagCCCGGCG-GGaGCUGccgcccGGGCCa -3'
miRNA:   3'- -GCGCG----GGGUCGCaCCgCGAC------CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 97454 0.66 0.370632
Target:  5'- gCGCGCCgCAGCc--GCGCcaGGGCCGc -3'
miRNA:   3'- -GCGCGGgGUCGcacCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31441 0.66 0.363089
Target:  5'- gGCGgCCgCGGCGgccccGGCGC--GGGCCGc -3'
miRNA:   3'- gCGCgGG-GUCGCa----CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 126527 0.66 0.363089
Target:  5'- cCGCucCCCCGGCGgggcuuGCGCUGcGGCUGa -3'
miRNA:   3'- -GCGc-GGGGUCGCac----CGCGACcCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 122379 0.66 0.370632
Target:  5'- aGCGCgUCCAGCGacaUcugcgcgaagaaGGCGCU-GGGCCGc -3'
miRNA:   3'- gCGCG-GGGUCGC---A------------CCGCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 5436 0.66 0.378281
Target:  5'- uCGCucCCCCuGCGUguugcccgacGGCGgUGGcGGCCGc -3'
miRNA:   3'- -GCGc-GGGGuCGCA----------CCGCgACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 116428 0.66 0.378281
Target:  5'- gCGCGCUUgGGCucgagGGCGgUGGGcGCUGg -3'
miRNA:   3'- -GCGCGGGgUCGca---CCGCgACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 29188 0.66 0.375208
Target:  5'- cCGCGCCgCCGGCGccgccgggcucccGGUGCUcucggccgcgGcGGGCCGc -3'
miRNA:   3'- -GCGCGG-GGUCGCa------------CCGCGA----------C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 28431 0.66 0.373679
Target:  5'- gGCGCCCgcgcuggcuacgccgCGGCGccGCGCgacGGGCCGc -3'
miRNA:   3'- gCGCGGG---------------GUCGCacCGCGac-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 44329 0.66 0.370632
Target:  5'- gGUGCCCgCcgGGCGUGauuaacGCGCgcccGGGGCUGc -3'
miRNA:   3'- gCGCGGG-G--UCGCAC------CGCGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29981 0.66 0.370632
Target:  5'- aCGCGgCCgGGCc-GGCGCggcGGGaGCCGc -3'
miRNA:   3'- -GCGCgGGgUCGcaCCGCGa--CCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 87629 0.66 0.378281
Target:  5'- gGCGCCCgGGCu--GCGCUGGaaGCCa -3'
miRNA:   3'- gCGCGGGgUCGcacCGCGACCc-CGGc -5'
6567 3' -67.3 NC_001847.1 + 15295 0.67 0.326995
Target:  5'- cCGaCGCUgaCCGGCacGGCGUcgGGGGCCGc -3'
miRNA:   3'- -GC-GCGG--GGUCGcaCCGCGa-CCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.