miRNA display CGI


Results 121 - 140 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 103097 0.67 0.348326
Target:  5'- cCGCGCCCCGGaccuuuCGCgGGGGCUu -3'
miRNA:   3'- -GCGCGGGGUCgcacc-GCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 42880 0.67 0.341106
Target:  5'- cCGCGCCacgCUAGUG-GGCGCcuuugcgacucGGGGCUGa -3'
miRNA:   3'- -GCGCGG---GGUCGCaCCGCGa----------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 58807 0.67 0.341106
Target:  5'- aGCGCCU--GCGccGGCGCcuGGGCCGg -3'
miRNA:   3'- gCGCGGGguCGCa-CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 59161 0.67 0.341106
Target:  5'- gGCGCCgcuuggCCAGgG-GGCgGCggucgagGGGGCCGu -3'
miRNA:   3'- gCGCGG------GGUCgCaCCG-CGa------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 27955 0.67 0.341106
Target:  5'- uCGCGUccgggCCCAGCucgcuagacuucGUGGCGCcgcgcuGGGCCGc -3'
miRNA:   3'- -GCGCG-----GGGUCG------------CACCGCGac----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30228 0.67 0.341106
Target:  5'- gCGCGCCCgGgccgaggugcGCGUGuCGCUGGcGGCg- -3'
miRNA:   3'- -GCGCGGGgU----------CGCACcGCGACC-CCGgc -5'
6567 3' -67.3 NC_001847.1 + 74030 0.67 0.341106
Target:  5'- gCGUGCCgCUGGCGgacgUGGCGCUGGccuccuucucGGUCa -3'
miRNA:   3'- -GCGCGG-GGUCGC----ACCGCGACC----------CCGGc -5'
6567 3' -67.3 NC_001847.1 + 95382 0.67 0.341106
Target:  5'- cCGCGCCgCCGGCucugaggccGGCGCcGGGGacaaCGa -3'
miRNA:   3'- -GCGCGG-GGUCGca-------CCGCGaCCCCg---GC- -5'
6567 3' -67.3 NC_001847.1 + 44379 0.67 0.348326
Target:  5'- uGCGCCUCAag--GGCGCUcccgcucccGGGGCCc -3'
miRNA:   3'- gCGCGGGGUcgcaCCGCGA---------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 131896 0.67 0.340391
Target:  5'- gGCGCCCCugccgccGGCGagcacGGCGCgGGcGGCgCGc -3'
miRNA:   3'- gCGCGGGG-------UCGCa----CCGCGaCC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 133231 0.67 0.336827
Target:  5'- cCGCGCCgCGGCGggcUcucgcacgcgcucgcGGCGCUGGGcaaCCGg -3'
miRNA:   3'- -GCGCGGgGUCGC---A---------------CCGCGACCCc--GGC- -5'
6567 3' -67.3 NC_001847.1 + 130774 0.67 0.333996
Target:  5'- gCGCGCUCgCGGuCGcGGUGgaGGcGGCCGc -3'
miRNA:   3'- -GCGCGGG-GUC-GCaCCGCgaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 131285 0.67 0.355654
Target:  5'- gCGCaGCCCCGGCGccgucuaCGuCUGGGGCgGc -3'
miRNA:   3'- -GCG-CGGGGUCGCacc----GC-GACCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 70690 0.67 0.355654
Target:  5'- cCGCGCCgCC-GCG-GGCgGCggcgGGGGCg- -3'
miRNA:   3'- -GCGCGG-GGuCGCaCCG-CGa---CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 2745 0.67 0.31332
Target:  5'- gGC-CCCCGGCccGGCGCgGcGGcGCCGg -3'
miRNA:   3'- gCGcGGGGUCGcaCCGCGaC-CC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 122781 0.67 0.31332
Target:  5'- uGCGCUCCAGCaGgcuccgguggGGCGCUGacucGGGCa- -3'
miRNA:   3'- gCGCGGGGUCG-Ca---------CCGCGAC----CCCGgc -5'
6567 3' -67.3 NC_001847.1 + 120938 0.67 0.31332
Target:  5'- gGCGCgCgGGCGUGGUGgCUGauguGGGCgGa -3'
miRNA:   3'- gCGCGgGgUCGCACCGC-GAC----CCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 69422 0.67 0.31332
Target:  5'- gCGcCGCCCCGGCG-GGCuCUGGGaugaacgcGuCCGg -3'
miRNA:   3'- -GC-GCGGGGUCGCaCCGcGACCC--------C-GGC- -5'
6567 3' -67.3 NC_001847.1 + 45784 0.67 0.31332
Target:  5'- uCGCGCa-CGGCGccGGCGUcGGcGGCCGa -3'
miRNA:   3'- -GCGCGggGUCGCa-CCGCGaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 26491 0.67 0.31332
Target:  5'- gCGgGCCUggugcaaGGCGggccugccgGGCGC-GGGGCCGg -3'
miRNA:   3'- -GCgCGGGg------UCGCa--------CCGCGaCCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.