miRNA display CGI


Results 141 - 160 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 45784 0.67 0.31332
Target:  5'- uCGCGCa-CGGCGccGGCGUcGGcGGCCGa -3'
miRNA:   3'- -GCGCGggGUCGCa-CCGCGaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 26491 0.67 0.31332
Target:  5'- gCGgGCCUggugcaaGGCGggccugccgGGCGC-GGGGCCGg -3'
miRNA:   3'- -GCgCGGGg------UCGCa--------CCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 59161 0.67 0.341106
Target:  5'- gGCGCCgcuuggCCAGgG-GGCgGCggucgagGGGGCCGu -3'
miRNA:   3'- gCGCGG------GGUCgCaCCG-CGa------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 128102 0.67 0.326995
Target:  5'- gGCGaaagCCCAaacGaCGUGGCGCUGGcGCUGg -3'
miRNA:   3'- gCGCg---GGGU---C-GCACCGCGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 33697 0.67 0.320103
Target:  5'- gGCGCUCgCGGCGcggcGGCGCgu-GGCCGa -3'
miRNA:   3'- gCGCGGG-GUCGCa---CCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 43001 0.67 0.320103
Target:  5'- -aCGCCgCCGGgGgGGCGCgccGGGCCGc -3'
miRNA:   3'- gcGCGG-GGUCgCaCCGCGac-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 68931 0.67 0.320103
Target:  5'- gCGCGCCCgAGCcgc-CGCUGGGcggcGCCGa -3'
miRNA:   3'- -GCGCGGGgUCGcaccGCGACCC----CGGC- -5'
6567 3' -67.3 NC_001847.1 + 83026 0.67 0.320103
Target:  5'- gGCGCCgCCGGCccgcggccgcuaGU-GCGCUuGGGCCGc -3'
miRNA:   3'- gCGCGG-GGUCG------------CAcCGCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 122781 0.67 0.31332
Target:  5'- uGCGCUCCAGCaGgcuccgguggGGCGCUGacucGGGCa- -3'
miRNA:   3'- gCGCGGGGUCG-Ca---------CCGCGAC----CCCGgc -5'
6567 3' -67.3 NC_001847.1 + 2745 0.67 0.31332
Target:  5'- gGC-CCCCGGCccGGCGCgGcGGcGCCGg -3'
miRNA:   3'- gCGcGGGGUCGcaCCGCGaC-CC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 15295 0.67 0.326995
Target:  5'- cCGaCGCUgaCCGGCacGGCGUcgGGGGCCGc -3'
miRNA:   3'- -GC-GCGG--GGUCGcaCCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 102826 0.67 0.324225
Target:  5'- gCGUGUUCCAGCGggucccguuccgcGGCgGCgucgcGGGGCCGc -3'
miRNA:   3'- -GCGCGGGGUCGCa------------CCG-CGa----CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 80340 0.67 0.320103
Target:  5'- cCGCGCUcgCCAGCGcGGCGC-GGaaGGCgCGg -3'
miRNA:   3'- -GCGCGG--GGUCGCaCCGCGaCC--CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 105717 0.67 0.320103
Target:  5'- -aCGCCCCAGCGcucgcUGGCGCgcaGGUCa -3'
miRNA:   3'- gcGCGGGGUCGC-----ACCGCGaccCCGGc -5'
6567 3' -67.3 NC_001847.1 + 66208 0.67 0.320103
Target:  5'- gGCGCcgCCCAGCGgcggcucgGGCGCgcgcaaaaGGGCUGc -3'
miRNA:   3'- gCGCG--GGGUCGCa-------CCGCGac------CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 51509 0.67 0.320103
Target:  5'- aGCGCCgcgCCGGUGcGGCGCcggcaggcgGGGGCgGc -3'
miRNA:   3'- gCGCGG---GGUCGCaCCGCGa--------CCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 23656 0.67 0.320103
Target:  5'- aGCcCCCCGuGUGUGG-GCuUGGGGCgCGa -3'
miRNA:   3'- gCGcGGGGU-CGCACCgCG-ACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 8467 0.67 0.320103
Target:  5'- gGCGCCgggCCGGgGgcGGCGCUcggccgggggcGGGGCCc -3'
miRNA:   3'- gCGCGG---GGUCgCa-CCGCGA-----------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 107162 0.67 0.318057
Target:  5'- gCGCGgCCCAGCGcGGCGCcacGaagucuagcgagcuGGGCCc -3'
miRNA:   3'- -GCGCgGGGUCGCaCCGCGa--C--------------CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 203 0.67 0.31332
Target:  5'- -cCGCCCCcGCccccGGCGCccgGGGGCCc -3'
miRNA:   3'- gcGCGGGGuCGca--CCGCGa--CCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.