miRNA display CGI


Results 61 - 80 of 411 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 92267 0.72 0.165711
Target:  5'- gGCGCCCacUAGCGUGGCGC-GGuGCgCGg -3'
miRNA:   3'- gCGCGGG--GUCGCACCGCGaCCcCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 3071 0.72 0.165711
Target:  5'- uGCGCCgCCAGCGcguccGGCGCgcaGGccgcGGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCa----CCGCGa--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 95307 0.72 0.147035
Target:  5'- gGCGCCuCCAGgCGcGGCGCcggcaGGGCCGa -3'
miRNA:   3'- gCGCGG-GGUC-GCaCCGCGac---CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105884 0.72 0.165711
Target:  5'- uGCGCCgCCAGCGcguccGGCGCgcaGGccgcGGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCa----CCGCGa--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 22181 0.72 0.147035
Target:  5'- uCGCGCCgCGaauGCGcgGGCGCU-GGGCCGu -3'
miRNA:   3'- -GCGCGGgGU---CGCa-CCGCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 42052 0.72 0.143538
Target:  5'- -cCGCCCCGcuuuGCG-GGCGCgcgcgGGGGCCu -3'
miRNA:   3'- gcGCGGGGU----CGCaCCGCGa----CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 45514 0.72 0.147035
Target:  5'- gGCGCCgCCGcCGggcGGCGCggacGGGGCCGu -3'
miRNA:   3'- gCGCGG-GGUcGCa--CCGCGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 55670 0.72 0.15061
Target:  5'- cCGCGCUCCGGCuc-GCGCaGGcGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGcacCGCGaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 102934 0.72 0.15061
Target:  5'- cCGCGCCCCGGCcccgcccgcgGGCcucgggccccgGCcggGGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGca--------CCG-----------CGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 113538 0.72 0.15061
Target:  5'- aGCGCCgCCAGCGaguuuaggGGgGC-GGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa-------CCgCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 11312 0.72 0.157998
Target:  5'- gCGCGCCCgccgaggcCGGCG-GGCgGCUGGcGCCGg -3'
miRNA:   3'- -GCGCGGG--------GUCGCaCCG-CGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30393 0.72 0.157998
Target:  5'- gGCGCagaCGGCGcUGGCGCUGGccGCCGg -3'
miRNA:   3'- gCGCGgg-GUCGC-ACCGCGACCc-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 86039 0.72 0.154264
Target:  5'- uGCGCUgguUgGGCGaGGCGCUgGGGGCCa -3'
miRNA:   3'- gCGCGG---GgUCGCaCCGCGA-CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 134892 0.72 0.161813
Target:  5'- uCGgGCCCCugGGCGccgGGCGUcGGGGCgCGa -3'
miRNA:   3'- -GCgCGGGG--UCGCa--CCGCGaCCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 10725 0.72 0.15061
Target:  5'- aGCGCCgCCAGCGaguuuaggGGgGC-GGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa-------CCgCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 90311 0.71 0.195424
Target:  5'- gCGCGCgUUCGGUGgGGcCGCcGGGGCCGg -3'
miRNA:   3'- -GCGCG-GGGUCGCaCC-GCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 134615 0.71 0.194514
Target:  5'- aGCGCaucuaguagaaCAGCGUGG-GCUGGGGgCGg -3'
miRNA:   3'- gCGCGgg---------GUCGCACCgCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 71399 0.71 0.186488
Target:  5'- cCGCGCCgCCAG-GcGGCGCUGuugcucGGCCGg -3'
miRNA:   3'- -GCGCGG-GGUCgCaCCGCGACc-----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34271 0.71 0.185179
Target:  5'- cCGCGCCCCugccgccgacccccGGCGggccGGCGCUccGGcccuGGCCGg -3'
miRNA:   3'- -GCGCGGGG--------------UCGCa---CCGCGA--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29358 0.71 0.186488
Target:  5'- gCGCgGCCCCGGC--GGCGCUGcGcGCCGa -3'
miRNA:   3'- -GCG-CGGGGUCGcaCCGCGACcC-CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.