Results 101 - 120 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 19016 | 0.7 | 0.20003 |
Target: 5'- gCGCGCCCCAGCGcccGGC-CgaaaGGCCGa -3' miRNA: 3'- -GCGCGGGGUCGCa--CCGcGacc-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 104395 | 0.7 | 0.20003 |
Target: 5'- gCGCGCgCCAGCGcGcCGCUcGGGCCa -3' miRNA: 3'- -GCGCGgGGUCGCaCcGCGAcCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 105035 | 0.7 | 0.20003 |
Target: 5'- --gGCCgCCAGCGccgcGGCGCUGGGcGCgGg -3' miRNA: 3'- gcgCGG-GGUCGCa---CCGCGACCC-CGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 74376 | 0.7 | 0.204731 |
Target: 5'- uGCGCCU---CGUGGCGCUGGaGCUGg -3' miRNA: 3'- gCGCGGGgucGCACCGCGACCcCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 101076 | 0.7 | 0.226564 |
Target: 5'- aCGCGCUCC-GCGUGccccucgaaaaacgcGCGCgccgcGGGGCCc -3' miRNA: 3'- -GCGCGGGGuCGCAC---------------CGCGa----CCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 79695 | 0.7 | 0.204731 |
Target: 5'- gCGCGCCCCgccGGCGccaGGCGCUGcaGGaCCGc -3' miRNA: 3'- -GCGCGGGG---UCGCa--CCGCGACc-CC-GGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 61285 | 0.7 | 0.219411 |
Target: 5'- aCGCGCCCCgcgcaccgcggcGGCGUuuuuaugcgcgGGUGCgcGGGGCgGg -3' miRNA: 3'- -GCGCGGGG------------UCGCA-----------CCGCGa-CCCCGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 2222 | 0.7 | 0.20003 |
Target: 5'- --gGCCgCCAGCGccgcGGCGCUGGGcGCgGg -3' miRNA: 3'- gcgCGG-GGUCGCa---CCGCGACCC-CGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 135140 | 0.7 | 0.204731 |
Target: 5'- cCGCGCCCCccGCGcgGGgGCU-GGGCC- -3' miRNA: 3'- -GCGCGGGGu-CGCa-CCgCGAcCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 1273 | 0.7 | 0.209528 |
Target: 5'- aGC-CCCCAGCGguuggcGGCGC-GGuGGCUGg -3' miRNA: 3'- gCGcGGGGUCGCa-----CCGCGaCC-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29571 | 0.7 | 0.214915 |
Target: 5'- gGgGCgCCGGCGccGGCGCcgccgcgccgggccgGGGGCCGg -3' miRNA: 3'- gCgCGgGGUCGCa-CCGCGa--------------CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 3997 | 0.7 | 0.224501 |
Target: 5'- gCGCgGCCCC-GCGgGGCGCcGGGcCCGg -3' miRNA: 3'- -GCG-CGGGGuCGCaCCGCGaCCCcGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 2086 | 0.7 | 0.219411 |
Target: 5'- aGCGCCCC-GCGgggcccGCGCggcgGcGGGCCGc -3' miRNA: 3'- gCGCGGGGuCGCac----CGCGa---C-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 875 | 0.7 | 0.214421 |
Target: 5'- aCGCGCggCGGCGgcccGCGCcGGGGCCGc -3' miRNA: 3'- -GCGCGggGUCGCac--CGCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 3896 | 0.7 | 0.209528 |
Target: 5'- gGCGCCgCGGCGUagccaGCGC-GGGcGCCGg -3' miRNA: 3'- gCGCGGgGUCGCAc----CGCGaCCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 131164 | 0.7 | 0.206638 |
Target: 5'- cCGCGCuggcgcugcucacggCCCAccucGCGcUGGCGCUGuGGGUCGc -3' miRNA: 3'- -GCGCG---------------GGGU----CGC-ACCGCGAC-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 72785 | 0.7 | 0.216405 |
Target: 5'- gCGUGCCUgGGCGaaauuucGGCGCUcuuuguggcggcaucGGGGCCa -3' miRNA: 3'- -GCGCGGGgUCGCa------CCGCGA---------------CCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 80557 | 0.7 | 0.209528 |
Target: 5'- gCGCGCCgCCAGCGccGCccaGCccgcGGGGCCGu -3' miRNA: 3'- -GCGCGG-GGUCGCacCG---CGa---CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 28776 | 0.7 | 0.209528 |
Target: 5'- gCGCGCCUgcugCAGCGgcgcgugcagGGCuGCcGGGGCCa -3' miRNA: 3'- -GCGCGGG----GUCGCa---------CCG-CGaCCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 48260 | 0.7 | 0.218908 |
Target: 5'- uGCGCCCgAGCGacUGGUacaccgagaccauGUcGGGGCCGu -3' miRNA: 3'- gCGCGGGgUCGC--ACCG-------------CGaCCCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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