miRNA display CGI


Results 121 - 140 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 79695 0.7 0.204731
Target:  5'- gCGCGCCCCgccGGCGccaGGCGCUGcaGGaCCGc -3'
miRNA:   3'- -GCGCGGGG---UCGCa--CCGCGACc-CC-GGC- -5'
6567 3' -67.3 NC_001847.1 + 875 0.7 0.214421
Target:  5'- aCGCGCggCGGCGgcccGCGCcGGGGCCGc -3'
miRNA:   3'- -GCGCGggGUCGCac--CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 1582 0.7 0.20003
Target:  5'- gCGCGCgCCAGCGcGcCGCUcGGGCCa -3'
miRNA:   3'- -GCGCGgGGUCGCaCcGCGAcCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 29571 0.7 0.214915
Target:  5'- gGgGCgCCGGCGccGGCGCcgccgcgccgggccgGGGGCCGg -3'
miRNA:   3'- gCgCGgGGUCGCa-CCGCGa--------------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 72785 0.7 0.216405
Target:  5'- gCGUGCCUgGGCGaaauuucGGCGCUcuuuguggcggcaucGGGGCCa -3'
miRNA:   3'- -GCGCGGGgUCGCa------CCGCGA---------------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 48260 0.7 0.218908
Target:  5'- uGCGCCCgAGCGacUGGUacaccgagaccauGUcGGGGCCGu -3'
miRNA:   3'- gCGCGGGgUCGC--ACCG-------------CGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 131164 0.7 0.206638
Target:  5'- cCGCGCuggcgcugcucacggCCCAccucGCGcUGGCGCUGuGGGUCGc -3'
miRNA:   3'- -GCGCG---------------GGGU----CGC-ACCGCGAC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31077 0.7 0.209528
Target:  5'- uCGCaa-CCAGUacgacGcGGCGCUGGGGCCGg -3'
miRNA:   3'- -GCGcggGGUCG-----CaCCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 53256 0.7 0.214421
Target:  5'- gCGcCGCCUCGGCGgGGCGCUGcGcGCCc -3'
miRNA:   3'- -GC-GCGGGGUCGCaCCGCGACcC-CGGc -5'
6567 3' -67.3 NC_001847.1 + 106709 0.7 0.209528
Target:  5'- gGCGCCgCGGCGUagccaGCGC-GGGcGCCGg -3'
miRNA:   3'- gCGCGGgGUCGCAc----CGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 135140 0.7 0.204731
Target:  5'- cCGCGCCCCccGCGcgGGgGCU-GGGCC- -3'
miRNA:   3'- -GCGCGGGGu-CGCa-CCgCGAcCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 131589 0.7 0.209528
Target:  5'- gCGCGCCUgcugCAGCGgcgcgugcagGGCuGCcGGGGCCa -3'
miRNA:   3'- -GCGCGGG----GUCGCa---------CCG-CGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 116435 0.7 0.209528
Target:  5'- gGCGCUCCccgcGGCGcUGGCGgUGacgcGGGCCGu -3'
miRNA:   3'- gCGCGGGG----UCGC-ACCGCgAC----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 74376 0.7 0.204731
Target:  5'- uGCGCCU---CGUGGCGCUGGaGCUGg -3'
miRNA:   3'- gCGCGGGgucGCACCGCGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 104086 0.7 0.209528
Target:  5'- aGC-CCCCAGCGguuggcGGCGC-GGuGGCUGg -3'
miRNA:   3'- gCGcGGGGUCGCa-----CCGCGaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 44292 0.69 0.240373
Target:  5'- gGCGgCgCGGCGcGGCGCgGcGGGCCa -3'
miRNA:   3'- gCGCgGgGUCGCaCCGCGaC-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 3241 0.69 0.245314
Target:  5'- cCGCGCCgugcucgCCGGCGgcaggGGCGCcGGcGCCGc -3'
miRNA:   3'- -GCGCGG-------GGUCGCa----CCGCGaCCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 22126 0.69 0.240373
Target:  5'- gCGCGCCCUgggcccggcggcggcGGCGgcgcgcaaaagccGGCGCaGcGGGCCGg -3'
miRNA:   3'- -GCGCGGGG---------------UCGCa------------CCGCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 116629 0.69 0.240373
Target:  5'- gCGCGCCCgCAGCGcuggccucGGCagccgcgggcacGCUGGuGGCCu -3'
miRNA:   3'- -GCGCGGG-GUCGCa-------CCG------------CGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 31566 0.69 0.245314
Target:  5'- gGCGCCgCCGGCGgcgGGCcggccucGCccuaggGGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa--CCG-------CGa-----CCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.