miRNA display CGI


Results 41 - 60 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 15002 0.73 0.124109
Target:  5'- aGCGCCCCucGGCc--GCGgUGGGGCCGc -3'
miRNA:   3'- gCGCGGGG--UCGcacCGCgACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 21511 0.73 0.124109
Target:  5'- gCGCGCCUCGGCGggGGcCGC-GcGGGCCa -3'
miRNA:   3'- -GCGCGGGGUCGCa-CC-GCGaC-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 75107 0.73 0.126551
Target:  5'- gGCGCCCCGGCGcuugcccgagaaGGCccgggccccGCcGGGGCCGg -3'
miRNA:   3'- gCGCGGGGUCGCa-----------CCG---------CGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34263 0.73 0.127168
Target:  5'- gGCGCagaCCGGCGcgcGGCgGCUGGGcGCCGc -3'
miRNA:   3'- gCGCGg--GGUCGCa--CCG-CGACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 44035 0.73 0.130298
Target:  5'- aGgGCUgCAGCGaGGCGCgcgucGGGGCCGc -3'
miRNA:   3'- gCgCGGgGUCGCaCCGCGa----CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34536 0.73 0.130298
Target:  5'- uGCGCCgCCcGcCG-GGCGCuUGGGGCCa -3'
miRNA:   3'- gCGCGG-GGuC-GCaCCGCG-ACCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 36681 0.73 0.131569
Target:  5'- uGCGCCCCccgcuggacgagagcGGCGUGGUGgaGGcGGCUu -3'
miRNA:   3'- gCGCGGGG---------------UCGCACCGCgaCC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 96013 0.73 0.133498
Target:  5'- uCGaGCCCCAGCGcGGCGCgucGGCCGc -3'
miRNA:   3'- -GCgCGGGGUCGCaCCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 133714 0.73 0.133498
Target:  5'- aGCGCaaauagugCCUGGCG-GGCGC-GGGGCCGc -3'
miRNA:   3'- gCGCG--------GGGUCGCaCCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 15373 0.73 0.136771
Target:  5'- gGCcaGCCUucggggcgguCGGCGUcGGgGCUGGGGCCGg -3'
miRNA:   3'- gCG--CGGG----------GUCGCA-CCgCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 76388 0.73 0.140117
Target:  5'- aCG-GCCUCGGgGggGGCGCcgGGGGCCGc -3'
miRNA:   3'- -GCgCGGGGUCgCa-CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 32327 0.73 0.140117
Target:  5'- gGgGCCCgcgCGGCGcGGCGCggagGGGGCCc -3'
miRNA:   3'- gCgCGGG---GUCGCaCCGCGa---CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 42052 0.72 0.143538
Target:  5'- -cCGCCCCGcuuuGCG-GGCGCgcgcgGGGGCCu -3'
miRNA:   3'- gcGCGGGGU----CGCaCCGCGa----CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 91553 0.72 0.143538
Target:  5'- cCG-GCCCCAGCGccaCGCUGGGGCgCGc -3'
miRNA:   3'- -GCgCGGGGUCGCaccGCGACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 95307 0.72 0.147035
Target:  5'- gGCGCCuCCAGgCGcGGCGCcggcaGGGCCGa -3'
miRNA:   3'- gCGCGG-GGUC-GCaCCGCGac---CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 45514 0.72 0.147035
Target:  5'- gGCGCCgCCGcCGggcGGCGCggacGGGGCCGu -3'
miRNA:   3'- gCGCGG-GGUcGCa--CCGCGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 22181 0.72 0.147035
Target:  5'- uCGCGCCgCGaauGCGcgGGCGCU-GGGCCGu -3'
miRNA:   3'- -GCGCGGgGU---CGCa-CCGCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 121 0.72 0.15061
Target:  5'- cCGCGCCCCGGCcccgcccgcgGGCcucgggccccgGCcggGGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGca--------CCG-----------CGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 10725 0.72 0.15061
Target:  5'- aGCGCCgCCAGCGaguuuaggGGgGC-GGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa-------CCgCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 113538 0.72 0.15061
Target:  5'- aGCGCCgCCAGCGaguuuaggGGgGC-GGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa-------CCgCGaCCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.