miRNA display CGI


Results 81 - 100 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 81324 0.71 0.17376
Target:  5'- aGCGCCCCcGCuccGGCGCgccagGGGGCg- -3'
miRNA:   3'- gCGCGGGGuCGca-CCGCGa----CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 16328 0.71 0.17376
Target:  5'- cCGCGCCCUAGacgaccggcaCGgccuggaGGCGCUGGcGGCUGc -3'
miRNA:   3'- -GCGCGGGGUC----------GCa------CCGCGACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34397 0.71 0.177915
Target:  5'- cCGcCGCCgCGGCagacgcGGCGCUGGGGgCGg -3'
miRNA:   3'- -GC-GCGGgGUCGca----CCGCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 105776 0.71 0.177915
Target:  5'- gGcCGCCUCGGCGgcaGCGCcgccGGGGCCGc -3'
miRNA:   3'- gC-GCGGGGUCGCac-CGCGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 106286 0.71 0.177915
Target:  5'- aGCGCCgCCGGCGUcGCGCgcgcGGCCGc -3'
miRNA:   3'- gCGCGG-GGUCGCAcCGCGacc-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 74992 0.71 0.182157
Target:  5'- gGCGCCaggcucaguccgCCGGCG-GGCGg-GGGGCCa -3'
miRNA:   3'- gCGCGG------------GGUCGCaCCGCgaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 34271 0.71 0.185179
Target:  5'- cCGCGCCCCugccgccgacccccGGCGggccGGCGCUccGGcccuGGCCGg -3'
miRNA:   3'- -GCGCGGGG--------------UCGCa---CCGCGA--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29358 0.71 0.186488
Target:  5'- gCGCgGCCCCGGC--GGCGCUGcGcGCCGa -3'
miRNA:   3'- -GCG-CGGGGUCGcaCCGCGACcC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 71399 0.71 0.186488
Target:  5'- cCGCGCCgCCAG-GcGGCGCUGuugcucGGCCGg -3'
miRNA:   3'- -GCGCGG-GGUCgCaCCGCGACc-----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 74133 0.71 0.186488
Target:  5'- gGUGCUgC-GCGUGGCGCcGGGGCg- -3'
miRNA:   3'- gCGCGGgGuCGCACCGCGaCCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 102788 0.71 0.186488
Target:  5'- gGCGCCCCccGCGcgGGgGCUGGGcccccuccgcGCCGc -3'
miRNA:   3'- gCGCGGGGu-CGCa-CCgCGACCC----------CGGC- -5'
6567 3' -67.3 NC_001847.1 + 132171 0.71 0.186488
Target:  5'- gCGCgGCCCCGGC--GGCGCUGcGcGCCGa -3'
miRNA:   3'- -GCG-CGGGGUCGcaCCGCGACcC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 21849 0.71 0.19091
Target:  5'- uGCGCUCggugCAGCagGUGGUGCgGGGGCUGc -3'
miRNA:   3'- gCGCGGG----GUCG--CACCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 116560 0.71 0.19091
Target:  5'- uGUGCCUgGGCGacuuUGGCGCggcacacGGGCCGg -3'
miRNA:   3'- gCGCGGGgUCGC----ACCGCGac-----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 70724 0.71 0.192704
Target:  5'- aCGaCGCgCCGGCaGUGGCGCgcguaaaggcggaccUGGuGGCCGu -3'
miRNA:   3'- -GC-GCGgGGUCG-CACCGCG---------------ACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 134615 0.71 0.194514
Target:  5'- aGCGCaucuaguagaaCAGCGUGG-GCUGGGGgCGg -3'
miRNA:   3'- gCGCGgg---------GUCGCACCgCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 90311 0.71 0.195424
Target:  5'- gCGCGCgUUCGGUGgGGcCGCcGGGGCCGg -3'
miRNA:   3'- -GCGCG-GGGUCGCaCC-GCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 125062 0.7 0.199566
Target:  5'- uGUGCUCCcgcgcgcGGCGgGGCGCUGGGcCCGc -3'
miRNA:   3'- gCGCGGGG-------UCGCaCCGCGACCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 2222 0.7 0.20003
Target:  5'- --gGCCgCCAGCGccgcGGCGCUGGGcGCgGg -3'
miRNA:   3'- gcgCGG-GGUCGCa---CCGCGACCC-CGgC- -5'
6567 3' -67.3 NC_001847.1 + 1582 0.7 0.20003
Target:  5'- gCGCGCgCCAGCGcGcCGCUcGGGCCa -3'
miRNA:   3'- -GCGCGgGGUCGCaCcGCGAcCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.