miRNA display CGI


Results 121 - 140 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 132384 0.7 0.214915
Target:  5'- gGgGCgCCGGCGccGGCGCcgccgcgccgggccgGGGGCCGg -3'
miRNA:   3'- gCgCGgGGUCGCa-CCGCGa--------------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29571 0.7 0.214915
Target:  5'- gGgGCgCCGGCGccGGCGCcgccgcgccgggccgGGGGCCGg -3'
miRNA:   3'- gCgCGgGGUCGCa-CCGCGa--------------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 72785 0.7 0.216405
Target:  5'- gCGUGCCUgGGCGaaauuucGGCGCUcuuuguggcggcaucGGGGCCa -3'
miRNA:   3'- -GCGCGGGgUCGCa------CCGCGA---------------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 57659 0.7 0.217904
Target:  5'- gGCGCCgUcgGGCaggcggugggcacgGUGGUGCUGGGcGCCGc -3'
miRNA:   3'- gCGCGGgG--UCG--------------CACCGCGACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 48260 0.7 0.218908
Target:  5'- uGCGCCCgAGCGacUGGUacaccgagaccauGUcGGGGCCGu -3'
miRNA:   3'- gCGCGGGgUCGC--ACCG-------------CGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 61285 0.7 0.219411
Target:  5'- aCGCGCCCCgcgcaccgcggcGGCGUuuuuaugcgcgGGUGCgcGGGGCgGg -3'
miRNA:   3'- -GCGCGGGG------------UCGCA-----------CCGCGa-CCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 2086 0.7 0.219411
Target:  5'- aGCGCCCC-GCGgggcccGCGCggcgGcGGGCCGc -3'
miRNA:   3'- gCGCGGGGuCGCac----CGCGa---C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 104899 0.7 0.219411
Target:  5'- aGCGCCCC-GCGgggcccGCGCggcgGcGGGCCGc -3'
miRNA:   3'- gCGCGGGGuCGCac----CGCGa---C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 90811 0.7 0.219411
Target:  5'- gCGCGCguaaucacgCCCGGCGggcaccgcucUGGCGCUGGcccGCCGc -3'
miRNA:   3'- -GCGCG---------GGGUCGC----------ACCGCGACCc--CGGC- -5'
6567 3' -67.3 NC_001847.1 + 77840 0.7 0.219411
Target:  5'- uGCGCCaCUGGCcaGcGCGCUGGGGgCGc -3'
miRNA:   3'- gCGCGG-GGUCGcaC-CGCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 3997 0.7 0.224501
Target:  5'- gCGCgGCCCC-GCGgGGCGCcGGGcCCGg -3'
miRNA:   3'- -GCG-CGGGGuCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 75313 0.7 0.224501
Target:  5'- gGUGCCCC-GCGaGGCGCUGGcGCa- -3'
miRNA:   3'- gCGCGGGGuCGCaCCGCGACCcCGgc -5'
6567 3' -67.3 NC_001847.1 + 99589 0.7 0.224501
Target:  5'- gCGCGCaCgCCaAGCuUGGCGC-GGGGCUGc -3'
miRNA:   3'- -GCGCG-G-GG-UCGcACCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 106810 0.7 0.224501
Target:  5'- gCGCgGCCCC-GCGgGGCGCcGGGcCCGg -3'
miRNA:   3'- -GCG-CGGGGuCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 101076 0.7 0.226564
Target:  5'- aCGCGCUCC-GCGUGccccucgaaaaacgcGCGCgccgcGGGGCCc -3'
miRNA:   3'- -GCGCGGGGuCGCAC---------------CGCGa----CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 99440 0.69 0.22969
Target:  5'- aCGCuGCgCCAGCGUGggaguugcgcaGCGCgccgcucGGGGCCa -3'
miRNA:   3'- -GCG-CGgGGUCGCAC-----------CGCGa------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 80371 0.69 0.22969
Target:  5'- gCGUGCCCaCGccugggacgaccGUcugGUGGCGCUugGGGGCCGc -3'
miRNA:   3'- -GCGCGGG-GU------------CG---CACCGCGA--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 62700 0.69 0.22969
Target:  5'- aGCGCCgcguCCAGCGUGcgcauguuccGCGUUGcGGCCGu -3'
miRNA:   3'- gCGCGG----GGUCGCAC----------CGCGACcCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 33521 0.69 0.22969
Target:  5'- gGCGCCgCCgcggaGGCGccgGGCGC-GGGcGCCGa -3'
miRNA:   3'- gCGCGG-GG-----UCGCa--CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 32117 0.69 0.22969
Target:  5'- uGCGgCCCGcccGCcgccGGCGCUGGGcGCCGc -3'
miRNA:   3'- gCGCgGGGU---CGca--CCGCGACCC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.