miRNA display CGI


Results 141 - 160 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 45254 0.69 0.230215
Target:  5'- uGCGCCgCCGGCGUGaGCGCggcgaagcccgccgcGGcGaGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCAC-CGCGa--------------CC-C-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 95501 0.69 0.233383
Target:  5'- uGCGCCgCCcgugggccuGGCG-GGCGCgccaggcuugccccUGGGGCUGg -3'
miRNA:   3'- gCGCGG-GG---------UCGCaCCGCG--------------ACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 27193 0.69 0.234447
Target:  5'- gGUGCUUCAGCGUuaggacgGGCGCgccGGGGCg- -3'
miRNA:   3'- gCGCGGGGUCGCA-------CCGCGa--CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 32121 0.69 0.234981
Target:  5'- uCGgGCCCCcgGGCGccgGGgGCgGGGGCgGg -3'
miRNA:   3'- -GCgCGGGG--UCGCa--CCgCGaCCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 18108 0.69 0.234981
Target:  5'- gGUGCUCCAGCagcuccgcGGCGgUGGGGCgCGc -3'
miRNA:   3'- gCGCGGGGUCGca------CCGCgACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 134934 0.69 0.234981
Target:  5'- uCGgGCCCCcgGGCGccgGGgGCgGGGGCgGg -3'
miRNA:   3'- -GCgCGGGG--UCGCa--CCgCGaCCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 51960 0.69 0.234981
Target:  5'- gCGCGCCCCccgccguccgccAGCccgucgGGCGUUGGGaggucGCCGg -3'
miRNA:   3'- -GCGCGGGG------------UCGca----CCGCGACCC-----CGGC- -5'
6567 3' -67.3 NC_001847.1 + 95088 0.69 0.234981
Target:  5'- gGCGCU--GGCGUGGCGg-GGGGCgCGa -3'
miRNA:   3'- gCGCGGggUCGCACCGCgaCCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 116148 0.69 0.234981
Target:  5'- gCGCGgCCCGa---GGCGCUGGcGGCCGc -3'
miRNA:   3'- -GCGCgGGGUcgcaCCGCGACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 2930 0.69 0.234981
Target:  5'- cCGCGCCgCCAGCGcGGCcgccuccaGCgcGGcGGCCGc -3'
miRNA:   3'- -GCGCGG-GGUCGCaCCG--------CGa-CC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 83572 0.69 0.238744
Target:  5'- gGCuGCCCCGGCGccgcggaagcgcUGGCGagcugcgccgacgcCUGGGcGCCGc -3'
miRNA:   3'- gCG-CGGGGUCGC------------ACCGC--------------GACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 123455 0.69 0.239829
Target:  5'- cCGgGCuuggCCCGGCGacGGCcgccgcgggcucgGCUGGGGCCGc -3'
miRNA:   3'- -GCgCG----GGGUCGCa-CCG-------------CGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 124939 0.69 0.240373
Target:  5'- gCGCGCCCUgggcccggcggcggcGGCGgcgcgcaaaagccGGCGCaGcGGGCCGg -3'
miRNA:   3'- -GCGCGGGG---------------UCGCa------------CCGCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3954 0.69 0.240373
Target:  5'- gCGCGaCCCaCAGCGccaGCGCgagGuGGGCCGu -3'
miRNA:   3'- -GCGC-GGG-GUCGCac-CGCGa--C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 22126 0.69 0.240373
Target:  5'- gCGCGCCCUgggcccggcggcggcGGCGgcgcgcaaaagccGGCGCaGcGGGCCGg -3'
miRNA:   3'- -GCGCGGGG---------------UCGCa------------CCGCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 116629 0.69 0.240373
Target:  5'- gCGCGCCCgCAGCGcuggccucGGCagccgcgggcacGCUGGuGGCCu -3'
miRNA:   3'- -GCGCGGG-GUCGCa-------CCG------------CGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 44292 0.69 0.240373
Target:  5'- gGCGgCgCGGCGcGGCGCgGcGGGCCa -3'
miRNA:   3'- gCGCgGgGUCGCaCCGCGaC-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 134379 0.69 0.245314
Target:  5'- gGCGCCgCCGGCGgcgGGCcggccucGCccuaggGGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa--CCG-------CGa-----CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 3241 0.69 0.245314
Target:  5'- cCGCGCCgugcucgCCGGCGgcaggGGCGCcGGcGCCGc -3'
miRNA:   3'- -GCGCGG-------GGUCGCa----CCGCGaCCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31566 0.69 0.245314
Target:  5'- gGCGCCgCCGGCGgcgGGCcggccucGCccuaggGGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa--CCG-------CGa-----CCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.