Results 61 - 80 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 115294 | 0.66 | 0.370632 |
Target: 5'- gGCGCCCC--CG-GGCGC--GGGCCa -3' miRNA: 3'- gCGCGGGGucGCaCCGCGacCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 74373 | 0.66 | 0.370632 |
Target: 5'- gGCGCgCgCGGUagaGGCGCUGGGGgaCCGc -3' miRNA: 3'- gCGCGgG-GUCGca-CCGCGACCCC--GGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 132794 | 0.66 | 0.370632 |
Target: 5'- aCGCGgCCgGGCc-GGCGCggcGGGaGCCGc -3' miRNA: 3'- -GCGCgGGgUCGcaCCGCGa--CCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 50846 | 0.66 | 0.370632 |
Target: 5'- aCGCGUCguaCAGCGcgcuucGGCGCccGGGcGCCGa -3' miRNA: 3'- -GCGCGGg--GUCGCa-----CCGCGa-CCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29981 | 0.66 | 0.370632 |
Target: 5'- aCGCGgCCgGGCc-GGCGCggcGGGaGCCGc -3' miRNA: 3'- -GCGCgGGgUCGcaCCGCGa--CCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 97454 | 0.66 | 0.370632 |
Target: 5'- gCGCGCCgCAGCc--GCGCcaGGGCCGc -3' miRNA: 3'- -GCGCGGgGUCGcacCGCGacCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 61921 | 0.66 | 0.369873 |
Target: 5'- cCGcCGCCCCccuccuccgcgucAGCGgcGGCGCggcccgcGcGGGCCGa -3' miRNA: 3'- -GC-GCGGGG-------------UCGCa-CCGCGa------C-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 23431 | 0.66 | 0.363089 |
Target: 5'- gGCGUCCggggucguCGGCGgGGCGUccGGGGUCGu -3' miRNA: 3'- gCGCGGG--------GUCGCaCCGCGa-CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 66688 | 0.66 | 0.363089 |
Target: 5'- gGgGCCCCGGCcgcgGGCGC-GGaccucugcGGCCGc -3' miRNA: 3'- gCgCGGGGUCGca--CCGCGaCC--------CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 126527 | 0.66 | 0.363089 |
Target: 5'- cCGCucCCCCGGCGgggcuuGCGCUGcGGCUGa -3' miRNA: 3'- -GCGc-GGGGUCGCac----CGCGACcCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 134254 | 0.66 | 0.363089 |
Target: 5'- gGCGgCCgCGGCGgccccGGCGC--GGGCCGc -3' miRNA: 3'- gCGCgGG-GUCGCa----CCGCGacCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 55246 | 0.66 | 0.363089 |
Target: 5'- aCGCGUCCCGcugcuGCGUgcggaccgaacGGCGCcGGGcCCGg -3' miRNA: 3'- -GCGCGGGGU-----CGCA-----------CCGCGaCCCcGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 14308 | 0.66 | 0.363089 |
Target: 5'- uCGCgGCCCCGcucccGC-UGcucGCGgUGGGGCCGg -3' miRNA: 3'- -GCG-CGGGGU-----CGcAC---CGCgACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 126244 | 0.66 | 0.363089 |
Target: 5'- gGCGUCCggggucguCGGCGgGGCGUccGGGGUCGu -3' miRNA: 3'- gCGCGGG--------GUCGCaCCGCGa-CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 45805 | 0.66 | 0.363089 |
Target: 5'- gCGCGCaaagCCCGGCG-GGaGCUGccgcccGGGCCa -3' miRNA: 3'- -GCGCG----GGGUCGCaCCgCGAC------CCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 31441 | 0.66 | 0.363089 |
Target: 5'- gGCGgCCgCGGCGgccccGGCGC--GGGCCGc -3' miRNA: 3'- gCGCgGG-GUCGCa----CCGCGacCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 13138 | 0.66 | 0.363089 |
Target: 5'- cCGCGCCgccugccgcggCCGGCGguugGGCuGCUGGcaGCCa -3' miRNA: 3'- -GCGCGG-----------GGUCGCa---CCG-CGACCc-CGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 71206 | 0.66 | 0.363089 |
Target: 5'- uGCuGCCCCcGCGgccGCGCUGGGugauggaguguGCCa -3' miRNA: 3'- gCG-CGGGGuCGCac-CGCGACCC-----------CGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 104517 | 0.66 | 0.362341 |
Target: 5'- gGCgGCCgCC-GCGUuugcGGCGCUgcgcggcggccccGGGGCCGc -3' miRNA: 3'- gCG-CGG-GGuCGCA----CCGCGA-------------CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 59838 | 0.67 | 0.358615 |
Target: 5'- aGCGCCUCgcggggcaccggccaGGCGcGGuCGCcGaGGGCCGg -3' miRNA: 3'- gCGCGGGG---------------UCGCaCC-GCGaC-CCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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