miRNA display CGI


Results 81 - 100 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 121853 0.67 0.355654
Target:  5'- gGCGCCCgcgUAGCGc-GCGCacaGGGCCGg -3'
miRNA:   3'- gCGCGGG---GUCGCacCGCGac-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 11558 0.67 0.355654
Target:  5'- aGUGCgCCCAGCG-GGUGCggcugccGcGGuGCCGg -3'
miRNA:   3'- gCGCG-GGGUCGCaCCGCGa------C-CC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 82607 0.67 0.355654
Target:  5'- gGCGCCUguGCGccGcGCGCUGGagcuuGCCGc -3'
miRNA:   3'- gCGCGGGguCGCa-C-CGCGACCc----CGGC- -5'
6567 3' -67.3 NC_001847.1 + 131285 0.67 0.355654
Target:  5'- gCGCaGCCCCGGCGccgucuaCGuCUGGGGCgGc -3'
miRNA:   3'- -GCG-CGGGGUCGCacc----GC-GACCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 27847 0.67 0.355654
Target:  5'- aGCGgagaCCCCGuGCG-GGCcCUGuGGGCCGc -3'
miRNA:   3'- gCGC----GGGGU-CGCaCCGcGAC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 70690 0.67 0.355654
Target:  5'- cCGCGCCgCC-GCG-GGCgGCggcgGGGGCg- -3'
miRNA:   3'- -GCGCGG-GGuCGCaCCG-CGa---CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 49375 0.67 0.354916
Target:  5'- gGuCGCCggcacuaagacuaCCGGCcuggGUGGCGC-GGGGCUGa -3'
miRNA:   3'- gC-GCGG-------------GGUCG----CACCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 42475 0.67 0.353444
Target:  5'- cCGCGCCCCGuacgucGCGUuugacccGGCGCUGuugaaggaaaacGGCCa -3'
miRNA:   3'- -GCGCGGGGU------CGCA-------CCGCGACc-----------CCGGc -5'
6567 3' -67.3 NC_001847.1 + 7200 0.67 0.351244
Target:  5'- gCGCGUCCUcgAGCGcggcugggccguccaUGGCGCUGcagcGGCUGg -3'
miRNA:   3'- -GCGCGGGG--UCGC---------------ACCGCGACc---CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103097 0.67 0.348326
Target:  5'- cCGCGCCCCGGaccuuuCGCgGGGGCUu -3'
miRNA:   3'- -GCGCGGGGUCgcacc-GCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 96609 0.67 0.348326
Target:  5'- aCGCGgguuuUCCUugcGCGU-GCGCgGGGGCCGg -3'
miRNA:   3'- -GCGC-----GGGGu--CGCAcCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 42342 0.67 0.348326
Target:  5'- gGCGCCC--GUGUGGCGC-GGcGGCg- -3'
miRNA:   3'- gCGCGGGguCGCACCGCGaCC-CCGgc -5'
6567 3' -67.3 NC_001847.1 + 132309 0.67 0.348326
Target:  5'- gCGCGCUguucagcccgCCGGCGgaggugccGGCGCggcUGGcGGCCGc -3'
miRNA:   3'- -GCGCGG----------GGUCGCa-------CCGCG---ACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 44379 0.67 0.348326
Target:  5'- uGCGCCUCAag--GGCGCUcccgcucccGGGGCCc -3'
miRNA:   3'- gCGCGGGGUcgcaCCGCGA---------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 118880 0.67 0.348326
Target:  5'- cCGgGCgCUCGGUGcacGGgGCcGGGGCCGg -3'
miRNA:   3'- -GCgCG-GGGUCGCa--CCgCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 11156 0.67 0.348326
Target:  5'- gGCgGCUaaacuaCCGGCGUcGGgaGCUGGGGCUGc -3'
miRNA:   3'- gCG-CGG------GGUCGCA-CCg-CGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29150 0.67 0.348326
Target:  5'- uGCGCCgucgCCugccGCGaGGCGCUGGaGGCgGc -3'
miRNA:   3'- gCGCGG----GGu---CGCaCCGCGACC-CCGgC- -5'
6567 3' -67.3 NC_001847.1 + 54577 0.67 0.348326
Target:  5'- aCG-GCCCC-GCGggcugggcGGCGCUGGcGGCgCGc -3'
miRNA:   3'- -GCgCGGGGuCGCa-------CCGCGACC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 131963 0.67 0.348326
Target:  5'- uGCGCCgucgCCugccGCGaGGCGCUGGaGGCgGc -3'
miRNA:   3'- gCGCGG----GGu---CGCaCCGCGACC-CCGgC- -5'
6567 3' -67.3 NC_001847.1 + 127032 0.67 0.348326
Target:  5'- gGgGCCCC-GCGccuGCGCUGGcGCCGc -3'
miRNA:   3'- gCgCGGGGuCGCac-CGCGACCcCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.