miRNA display CGI


Results 101 - 120 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 44379 0.67 0.348326
Target:  5'- uGCGCCUCAag--GGCGCUcccgcucccGGGGCCc -3'
miRNA:   3'- gCGCGGGGUcgcaCCGCGA---------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 11156 0.67 0.348326
Target:  5'- gGCgGCUaaacuaCCGGCGUcGGgaGCUGGGGCUGc -3'
miRNA:   3'- gCG-CGG------GGUCGCA-CCg-CGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 95157 0.67 0.341106
Target:  5'- gGUGCCggcaUGGCGgggGGCGCgaucgGGGGCgCGa -3'
miRNA:   3'- gCGCGGg---GUCGCa--CCGCGa----CCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 42880 0.67 0.341106
Target:  5'- cCGCGCCacgCUAGUG-GGCGCcuuugcgacucGGGGCUGa -3'
miRNA:   3'- -GCGCGG---GGUCGCaCCGCGa----------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 74030 0.67 0.341106
Target:  5'- gCGUGCCgCUGGCGgacgUGGCGCUGGccuccuucucGGUCa -3'
miRNA:   3'- -GCGCGG-GGUCGC----ACCGCGACC----------CCGGc -5'
6567 3' -67.3 NC_001847.1 + 101912 0.67 0.341106
Target:  5'- gGCGCCgCGGCGcccGGCGC-GGcGCCa -3'
miRNA:   3'- gCGCGGgGUCGCa--CCGCGaCCcCGGc -5'
6567 3' -67.3 NC_001847.1 + 95382 0.67 0.341106
Target:  5'- cCGCGCCgCCGGCucugaggccGGCGCcGGGGacaaCGa -3'
miRNA:   3'- -GCGCGG-GGUCGca-------CCGCGaCCCCg---GC- -5'
6567 3' -67.3 NC_001847.1 + 42095 0.67 0.341106
Target:  5'- uCGCgGUgCCGGCaccGUccaGGCGCcgGGGGCCGc -3'
miRNA:   3'- -GCG-CGgGGUCG---CA---CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 119214 0.67 0.341106
Target:  5'- gGCGCCgCggccaccgcggGGCGgcggGGCagGCaUGGGGCCGu -3'
miRNA:   3'- gCGCGGgG-----------UCGCa---CCG--CG-ACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 119094 0.67 0.341106
Target:  5'- gGCGCCgCggccgccgcggGGCGgcggGGCagGCaUGGGGCCGu -3'
miRNA:   3'- gCGCGGgG-----------UCGCa---CCG--CG-ACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 27955 0.67 0.341106
Target:  5'- uCGCGUccgggCCCAGCucgcuagacuucGUGGCGCcgcgcuGGGCCGc -3'
miRNA:   3'- -GCGCG-----GGGUCG------------CACCGCGac----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 59161 0.67 0.341106
Target:  5'- gGCGCCgcuuggCCAGgG-GGCgGCggucgagGGGGCCGu -3'
miRNA:   3'- gCGCGG------GGUCgCaCCG-CGa------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30228 0.67 0.341106
Target:  5'- gCGCGCCCgGgccgaggugcGCGUGuCGCUGGcGGCg- -3'
miRNA:   3'- -GCGCGGGgU----------CGCACcGCGACC-CCGgc -5'
6567 3' -67.3 NC_001847.1 + 58807 0.67 0.341106
Target:  5'- aGCGCCU--GCGccGGCGCcuGGGCCGg -3'
miRNA:   3'- gCGCGGGguCGCa-CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 131896 0.67 0.340391
Target:  5'- gGCGCCCCugccgccGGCGagcacGGCGCgGGcGGCgCGc -3'
miRNA:   3'- gCGCGGGG-------UCGCa----CCGCGaCC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 29083 0.67 0.340391
Target:  5'- gGCGCCCCugccgccGGCGagcacGGCGCgGGcGGCgCGc -3'
miRNA:   3'- gCGCGGGG-------UCGCa----CCGCGaCC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 133231 0.67 0.336827
Target:  5'- cCGCGCCgCGGCGggcUcucgcacgcgcucgcGGCGCUGGGcaaCCGg -3'
miRNA:   3'- -GCGCGGgGUCGC---A---------------CCGCGACCCc--GGC- -5'
6567 3' -67.3 NC_001847.1 + 30418 0.67 0.336827
Target:  5'- cCGCGCCgCGGCGggcUcucgcacgcgcucgcGGCGCUGGGcaaCCGg -3'
miRNA:   3'- -GCGCGGgGUCGC---A---------------CCGCGACCCc--GGC- -5'
6567 3' -67.3 NC_001847.1 + 106109 0.67 0.333996
Target:  5'- gCGCGCagCUCGGCGagcgcGGCGC-GGGcGCCGc -3'
miRNA:   3'- -GCGCG--GGGUCGCa----CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 27961 0.67 0.333996
Target:  5'- gCGCGCUCgCGGuCGcGGUGgaGGcGGCCGc -3'
miRNA:   3'- -GCGCGGG-GUC-GCaCCGCgaCC-CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.