miRNA display CGI


Results 121 - 140 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 3296 0.67 0.333996
Target:  5'- gCGCGCagCUCGGCGagcgcGGCGC-GGGcGCCGc -3'
miRNA:   3'- -GCGCG--GGGUCGCa----CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 5873 0.67 0.333996
Target:  5'- gGUGgUCCAGCGcUGcGCGCagGGcGGCCGc -3'
miRNA:   3'- gCGCgGGGUCGC-AC-CGCGa-CC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 106109 0.67 0.333996
Target:  5'- gCGCGCagCUCGGCGagcgcGGCGC-GGGcGCCGc -3'
miRNA:   3'- -GCGCG--GGGUCGCa----CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 130774 0.67 0.333996
Target:  5'- gCGCGCUCgCGGuCGcGGUGgaGGcGGCCGc -3'
miRNA:   3'- -GCGCGGG-GUC-GCaCCGCgaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 118661 0.67 0.333996
Target:  5'- aGUGCCCCacccaggcagGGCG-GGgGUU-GGGCCGg -3'
miRNA:   3'- gCGCGGGG----------UCGCaCCgCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 60858 0.67 0.333996
Target:  5'- gGCGCCagGGCGUccaGCGCggGGcGGCCGc -3'
miRNA:   3'- gCGCGGggUCGCAc--CGCGa-CC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 74421 0.67 0.332587
Target:  5'- cCGCGCCCgucguggaggucgUGGCGgcgcacgacgccgUGGCGCUgcaguacgagcgGGGGCUGg -3'
miRNA:   3'- -GCGCGGG-------------GUCGC-------------ACCGCGA------------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 49797 0.67 0.331884
Target:  5'- aCGC-CCCCGG-GUGcgcugcugcugggcGCGCUGGcGGCCu -3'
miRNA:   3'- -GCGcGGGGUCgCAC--------------CGCGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 131120 0.67 0.326995
Target:  5'- aGCgGCCCCgcgagaGGCG-GGCGCcGGGcCCGg -3'
miRNA:   3'- gCG-CGGGG------UCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 19424 0.67 0.326995
Target:  5'- gCGCGCCCgUGGCGgcaaGCGCacacGGGCCGc -3'
miRNA:   3'- -GCGCGGG-GUCGCac--CGCGac--CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 15295 0.67 0.326995
Target:  5'- cCGaCGCUgaCCGGCacGGCGUcgGGGGCCGc -3'
miRNA:   3'- -GC-GCGG--GGUCGcaCCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 86363 0.67 0.326995
Target:  5'- gGCGCCCgCAGaCGaGGCGgc-GGGCCGc -3'
miRNA:   3'- gCGCGGG-GUC-GCaCCGCgacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 28307 0.67 0.326995
Target:  5'- aGCgGCCCCgcgagaGGCG-GGCGCcGGGcCCGg -3'
miRNA:   3'- gCG-CGGGG------UCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 28338 0.67 0.326995
Target:  5'- gGCGCCCC-GCGgGGcCGCgcgcccGGGCCc -3'
miRNA:   3'- gCGCGGGGuCGCaCC-GCGac----CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 128102 0.67 0.326995
Target:  5'- gGCGaaagCCCAaacGaCGUGGCGCUGGcGCUGg -3'
miRNA:   3'- gCGCg---GGGU---C-GCACCGCGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34074 0.67 0.326995
Target:  5'- cCG-GCCCCcGCGgcGGCcCcGGGGCCGg -3'
miRNA:   3'- -GCgCGGGGuCGCa-CCGcGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 80013 0.67 0.326995
Target:  5'- aCGCGCgC--GCGUuuGGCGCggggGGGGUCGg -3'
miRNA:   3'- -GCGCGgGguCGCA--CCGCGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 131151 0.67 0.326995
Target:  5'- gGCGCCCC-GCGgGGcCGCgcgcccGGGCCc -3'
miRNA:   3'- gCGCGGGGuCGCaCC-GCGac----CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 16047 0.67 0.326995
Target:  5'- cCGcCGCCCCgcGGCGgccgcGGCGCcucugcUGGGcGCCu -3'
miRNA:   3'- -GC-GCGGGG--UCGCa----CCGCG------ACCC-CGGc -5'
6567 3' -67.3 NC_001847.1 + 31855 0.67 0.326995
Target:  5'- gCGCGCCCgGGCucgccGGCGUUGcuGCCGg -3'
miRNA:   3'- -GCGCGGGgUCGca---CCGCGACccCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.