miRNA display CGI


Results 41 - 60 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 11312 0.72 0.157998
Target:  5'- gCGCGCCCgccgaggcCGGCG-GGCgGCUGGcGCCGg -3'
miRNA:   3'- -GCGCGGG--------GUCGCaCCG-CGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 11558 0.67 0.355654
Target:  5'- aGUGCgCCCAGCG-GGUGCggcugccGcGGuGCCGg -3'
miRNA:   3'- gCGCG-GGGUCGCaCCGCGa------C-CC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 12024 0.67 0.31942
Target:  5'- aGCGCCCCucugcccGGCG-GaGCGCUGGacGCCc -3'
miRNA:   3'- gCGCGGGG-------UCGCaC-CGCGACCc-CGGc -5'
6567 3' -67.3 NC_001847.1 + 12475 0.68 0.274916
Target:  5'- cCGCGgcuUCCC-GCGUGGCgGCgGGGGCgGc -3'
miRNA:   3'- -GCGC---GGGGuCGCACCG-CGaCCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 12693 0.69 0.251467
Target:  5'- uGCGCgUCGGCGgGGUGCaGGcaGGCCGg -3'
miRNA:   3'- gCGCGgGGUCGCaCCGCGaCC--CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 13138 0.66 0.363089
Target:  5'- cCGCGCCgccugccgcggCCGGCGguugGGCuGCUGGcaGCCa -3'
miRNA:   3'- -GCGCGG-----------GGUCGCa---CCG-CGACCc-CGGc -5'
6567 3' -67.3 NC_001847.1 + 13798 0.68 0.268894
Target:  5'- uGCGUagCCGGCGcagcGGUGUacgGGGGCCGg -3'
miRNA:   3'- gCGCGg-GGUCGCa---CCGCGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 14308 0.66 0.363089
Target:  5'- uCGCgGCCCCGcucccGC-UGcucGCGgUGGGGCCGg -3'
miRNA:   3'- -GCG-CGGGGU-----CGcAC---CGCgACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 14557 0.76 0.08156
Target:  5'- cCGCGCCgCAGCGcgGGUGCUGGcGGgCGc -3'
miRNA:   3'- -GCGCGGgGUCGCa-CCGCGACC-CCgGC- -5'
6567 3' -67.3 NC_001847.1 + 15002 0.73 0.124109
Target:  5'- aGCGCCCCucGGCc--GCGgUGGGGCCGc -3'
miRNA:   3'- gCGCGGGG--UCGcacCGCgACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 15295 0.67 0.326995
Target:  5'- cCGaCGCUgaCCGGCacGGCGUcgGGGGCCGc -3'
miRNA:   3'- -GC-GCGG--GGUCGcaCCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 15373 0.73 0.136771
Target:  5'- gGCcaGCCUucggggcgguCGGCGUcGGgGCUGGGGCCGg -3'
miRNA:   3'- gCG--CGGG----------GUCGCA-CCgCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 15518 0.67 0.320103
Target:  5'- uGCGgCUCGGCGggagccgcgGGCuGCUGGcGCCGg -3'
miRNA:   3'- gCGCgGGGUCGCa--------CCG-CGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 16047 0.67 0.326995
Target:  5'- cCGcCGCCCCgcGGCGgccgcGGCGCcucugcUGGGcGCCu -3'
miRNA:   3'- -GC-GCGGGG--UCGCa----CCGCG------ACCC-CGGc -5'
6567 3' -67.3 NC_001847.1 + 16328 0.71 0.17376
Target:  5'- cCGCGCCCUAGacgaccggcaCGgccuggaGGCGCUGGcGGCUGc -3'
miRNA:   3'- -GCGCGGGGUC----------GCa------CCGCGACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 17800 0.75 0.101988
Target:  5'- aCGgGCCCCAGCG-GGCgGgaGGGcGCCa -3'
miRNA:   3'- -GCgCGGGGUCGCaCCG-CgaCCC-CGGc -5'
6567 3' -67.3 NC_001847.1 + 18108 0.69 0.234981
Target:  5'- gGUGCUCCAGCagcuccgcGGCGgUGGGGCgCGc -3'
miRNA:   3'- gCGCGGGGUCGca------CCGCgACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 18238 0.69 0.25717
Target:  5'- gCGCGUgCUcGCGUGGCGCUugaaguugcGGGucaGCCGg -3'
miRNA:   3'- -GCGCGgGGuCGCACCGCGA---------CCC---CGGC- -5'
6567 3' -67.3 NC_001847.1 + 18809 0.66 0.386035
Target:  5'- gCGCGCgCCAGCGc-GCGCauGGGCaCGg -3'
miRNA:   3'- -GCGCGgGGUCGCacCGCGacCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 19016 0.7 0.20003
Target:  5'- gCGCGCCCCAGCGcccGGC-CgaaaGGCCGa -3'
miRNA:   3'- -GCGCGGGGUCGCa--CCGcGacc-CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.