miRNA display CGI


Results 61 - 80 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 19424 0.67 0.326995
Target:  5'- gCGCGCCCgUGGCGgcaaGCGCacacGGGCCGc -3'
miRNA:   3'- -GCGCGGG-GUCGCac--CGCGac--CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 19630 0.68 0.293629
Target:  5'- gGgGCgCCGGCGUcGGCGCgc-GGCCGc -3'
miRNA:   3'- gCgCGgGGUCGCA-CCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 21511 0.73 0.124109
Target:  5'- gCGCGCCUCGGCGggGGcCGC-GcGGGCCa -3'
miRNA:   3'- -GCGCGGGGUCGCa-CC-GCGaC-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 21742 0.68 0.274916
Target:  5'- gGCGCCggCCcGCGc-GCGCgggGGGGCCGc -3'
miRNA:   3'- gCGCGG--GGuCGCacCGCGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 21849 0.71 0.19091
Target:  5'- uGCGCUCggugCAGCagGUGGUGCgGGGGCUGc -3'
miRNA:   3'- gCGCGGG----GUCG--CACCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 22126 0.69 0.240373
Target:  5'- gCGCGCCCUgggcccggcggcggcGGCGgcgcgcaaaagccGGCGCaGcGGGCCGg -3'
miRNA:   3'- -GCGCGGGG---------------UCGCa------------CCGCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 22181 0.72 0.147035
Target:  5'- uCGCGCCgCGaauGCGcgGGCGCU-GGGCCGu -3'
miRNA:   3'- -GCGCGGgGU---CGCa-CCGCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 22218 0.69 0.245868
Target:  5'- aCGCGUCCgugGGCGUGGCGCccgUGuaGCCGa -3'
miRNA:   3'- -GCGCGGGg--UCGCACCGCG---ACccCGGC- -5'
6567 3' -67.3 NC_001847.1 + 23431 0.66 0.363089
Target:  5'- gGCGUCCggggucguCGGCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- gCGCGGG--------GUCGCaCCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 23656 0.67 0.320103
Target:  5'- aGCcCCCCGuGUGUGG-GCuUGGGGCgCGa -3'
miRNA:   3'- gCGcGGGGU-CGCACCgCG-ACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 24170 0.8 0.043818
Target:  5'- gCGCGCagccguacucgcaCAGCGUGGCGCUGGuGGCCa -3'
miRNA:   3'- -GCGCGgg-----------GUCGCACCGCGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 26491 0.67 0.31332
Target:  5'- gCGgGCCUggugcaaGGCGggccugccgGGCGC-GGGGCCGg -3'
miRNA:   3'- -GCgCGGGg------UCGCa--------CCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 27193 0.69 0.234447
Target:  5'- gGUGCUUCAGCGUuaggacgGGCGCgccGGGGCg- -3'
miRNA:   3'- gCGCGGGGUCGCA-------CCGCGa--CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 27535 0.68 0.268894
Target:  5'- gGaCGCCCgagaacggCGGCGcGGCgGCUGGGaGCCGc -3'
miRNA:   3'- gC-GCGGG--------GUCGCaCCG-CGACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 27817 0.68 0.287283
Target:  5'- uCGCGCCCCGGCGcacGCGC---GGCUGa -3'
miRNA:   3'- -GCGCGGGGUCGCac-CGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 27847 0.67 0.355654
Target:  5'- aGCGgagaCCCCGuGCG-GGCcCUGuGGGCCGc -3'
miRNA:   3'- gCGC----GGGGU-CGCaCCGcGAC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 27955 0.67 0.341106
Target:  5'- uCGCGUccgggCCCAGCucgcuagacuucGUGGCGCcgcgcuGGGCCGc -3'
miRNA:   3'- -GCGCG-----GGGUCG------------CACCGCGac----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 27961 0.67 0.333996
Target:  5'- gCGCGCUCgCGGuCGcGGUGgaGGcGGCCGc -3'
miRNA:   3'- -GCGCGGG-GUC-GCaCCGCgaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 28307 0.67 0.326995
Target:  5'- aGCgGCCCCgcgagaGGCG-GGCGCcGGGcCCGg -3'
miRNA:   3'- gCG-CGGGG------UCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 28338 0.67 0.326995
Target:  5'- gGCGCCCC-GCGgGGcCGCgcgcccGGGCCc -3'
miRNA:   3'- gCGCGGGGuCGCaCC-GCGac----CCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.