miRNA display CGI


Results 81 - 100 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 28431 0.66 0.373679
Target:  5'- gGCGCCCgcgcuggcuacgccgCGGCGccGCGCgacGGGCCGc -3'
miRNA:   3'- gCGCGGG---------------GUCGCacCGCGac-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 28776 0.7 0.209528
Target:  5'- gCGCGCCUgcugCAGCGgcgcgugcagGGCuGCcGGGGCCa -3'
miRNA:   3'- -GCGCGGG----GUCGCa---------CCG-CGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 28864 0.72 0.165711
Target:  5'- gCGCGaCgCCGGC--GGCGCUGGGGCg- -3'
miRNA:   3'- -GCGC-GgGGUCGcaCCGCGACCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 29083 0.67 0.340391
Target:  5'- gGCGCCCCugccgccGGCGagcacGGCGCgGGcGGCgCGc -3'
miRNA:   3'- gCGCGGGG-------UCGCa----CCGCGaCC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 29150 0.67 0.348326
Target:  5'- uGCGCCgucgCCugccGCGaGGCGCUGGaGGCgGc -3'
miRNA:   3'- gCGCGG----GGu---CGCaCCGCGACC-CCGgC- -5'
6567 3' -67.3 NC_001847.1 + 29188 0.66 0.375208
Target:  5'- cCGCGCCgCCGGCGccgccgggcucccGGUGCUcucggccgcgGcGGGCCGc -3'
miRNA:   3'- -GCGCGG-GGUCGCa------------CCGCGA----------C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29358 0.71 0.186488
Target:  5'- gCGCgGCCCCGGC--GGCGCUGcGcGCCGa -3'
miRNA:   3'- -GCG-CGGGGUCGcaCCGCGACcC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 29394 0.66 0.393893
Target:  5'- cCGCGCUggaGGCGgccGCGCUGGcGGCgCGg -3'
miRNA:   3'- -GCGCGGgg-UCGCac-CGCGACC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 29427 0.76 0.073791
Target:  5'- uGCGCgCCAGCGa-GCGCUGGGGCg- -3'
miRNA:   3'- gCGCGgGGUCGCacCGCGACCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 29464 0.69 0.262979
Target:  5'- gGCGgCCCGcGCGUcGGC-CUGGGcGCUGg -3'
miRNA:   3'- gCGCgGGGU-CGCA-CCGcGACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 29496 0.67 0.348326
Target:  5'- gCGCGCUguucagcccgCCGGCGgaggugccGGCGCggcUGGcGGCCGc -3'
miRNA:   3'- -GCGCGG----------GGUCGCa-------CCGCG---ACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29571 0.7 0.214915
Target:  5'- gGgGCgCCGGCGccGGCGCcgccgcgccgggccgGGGGCCGg -3'
miRNA:   3'- gCgCGgGGUCGCa-CCGCGa--------------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29672 0.68 0.300084
Target:  5'- aGCGCaaaCGGCGUGGCGCagcugaUGGcGCUGa -3'
miRNA:   3'- gCGCGgg-GUCGCACCGCG------ACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29981 0.66 0.370632
Target:  5'- aCGCGgCCgGGCc-GGCGCggcGGGaGCCGc -3'
miRNA:   3'- -GCGCgGGgUCGcaCCGCGa--CCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 30104 0.78 0.054523
Target:  5'- cCGCG-CCCAGCGccgcGGCGCUGGcGGCCu -3'
miRNA:   3'- -GCGCgGGGUCGCa---CCGCGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 30160 0.77 0.068263
Target:  5'- uGCGCCCUggguGCGUGGCGCUcGGcggaccuGGCCGa -3'
miRNA:   3'- gCGCGGGGu---CGCACCGCGA-CC-------CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30228 0.67 0.341106
Target:  5'- gCGCGCCCgGgccgaggugcGCGUGuCGCUGGcGGCg- -3'
miRNA:   3'- -GCGCGGGgU----------CGCACcGCGACC-CCGgc -5'
6567 3' -67.3 NC_001847.1 + 30393 0.72 0.157998
Target:  5'- gGCGCagaCGGCGcUGGCGCUGGccGCCGg -3'
miRNA:   3'- gCGCGgg-GUCGC-ACCGCGACCc-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 30418 0.67 0.336827
Target:  5'- cCGCGCCgCGGCGggcUcucgcacgcgcucgcGGCGCUGGGcaaCCGg -3'
miRNA:   3'- -GCGCGGgGUCGC---A---------------CCGCGACCCc--GGC- -5'
6567 3' -67.3 NC_001847.1 + 30994 0.75 0.092373
Target:  5'- cCGCGCag-GGCGcGGCGCUGGGGCuCGg -3'
miRNA:   3'- -GCGCGgggUCGCaCCGCGACCCCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.