miRNA display CGI


Results 101 - 120 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 31077 0.7 0.209528
Target:  5'- uCGCaa-CCAGUacgacGcGGCGCUGGGGCCGg -3'
miRNA:   3'- -GCGcggGGUCG-----CaCCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31196 0.74 0.104278
Target:  5'- gCGCGCCgaGGCGccgccgcUGGUGCUGGaGGCCGc -3'
miRNA:   3'- -GCGCGGggUCGC-------ACCGCGACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31249 0.66 0.386035
Target:  5'- cCGCgGCgCCCGGCGUGGa-CUGGGacGCgGa -3'
miRNA:   3'- -GCG-CG-GGGUCGCACCgcGACCC--CGgC- -5'
6567 3' -67.3 NC_001847.1 + 31441 0.66 0.363089
Target:  5'- gGCGgCCgCGGCGgccccGGCGC--GGGCCGc -3'
miRNA:   3'- gCGCgGG-GUCGCa----CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31566 0.69 0.245314
Target:  5'- gGCGCCgCCGGCGgcgGGCcggccucGCccuaggGGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa--CCG-------CGa-----CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 31727 0.66 0.393893
Target:  5'- gCGCGCCgCuGCGgagcGGcCGCgGaGGGCCa -3'
miRNA:   3'- -GCGCGGgGuCGCa---CC-GCGaC-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 31855 0.67 0.326995
Target:  5'- gCGCGCCCgGGCucgccGGCGUUGcuGCCGg -3'
miRNA:   3'- -GCGCGGGgUCGca---CCGCGACccCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31951 0.71 0.169693
Target:  5'- gCGCGgUCCGGCGcgcGGCGCgcGGGGCgGg -3'
miRNA:   3'- -GCGCgGGGUCGCa--CCGCGa-CCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 32020 0.69 0.245868
Target:  5'- gCGCgaaGCUCCGGCGgGGCGC-GGGGaCGg -3'
miRNA:   3'- -GCG---CGGGGUCGCaCCGCGaCCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 32044 0.68 0.293629
Target:  5'- --aGCCCCcGCGaaagguccggGGCGCggagacggcgGGGGCCGg -3'
miRNA:   3'- gcgCGGGGuCGCa---------CCGCGa---------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 32079 0.72 0.161813
Target:  5'- uCGgGCCCCugGGCGccgGGCGUcGGGGCgCGa -3'
miRNA:   3'- -GCgCGGGG--UCGCa--CCGCGaCCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 32117 0.69 0.22969
Target:  5'- uGCGgCCCGcccGCcgccGGCGCUGGGcGCCGc -3'
miRNA:   3'- gCGCgGGGU---CGca--CCGCGACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 32121 0.69 0.234981
Target:  5'- uCGgGCCCCcgGGCGccgGGgGCgGGGGCgGg -3'
miRNA:   3'- -GCgCGGGG--UCGCa--CCgCGaCCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 32187 0.66 0.401855
Target:  5'- gGCcCCCCGGCcggGGCccgaggcccGCgggcGGGGCCGg -3'
miRNA:   3'- gCGcGGGGUCGca-CCG---------CGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 32279 0.66 0.378281
Target:  5'- uCGCGCCgUCcGCGUGGCGC---GGCCc -3'
miRNA:   3'- -GCGCGG-GGuCGCACCGCGaccCCGGc -5'
6567 3' -67.3 NC_001847.1 + 32327 0.73 0.140117
Target:  5'- gGgGCCCgcgCGGCGcGGCGCggagGGGGCCc -3'
miRNA:   3'- gCgCGGG---GUCGCaCCGCGa---CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 33051 0.66 0.386035
Target:  5'- aCGCGCUCgCGGCcgaGGCGCUGcGGCa- -3'
miRNA:   3'- -GCGCGGG-GUCGca-CCGCGACcCCGgc -5'
6567 3' -67.3 NC_001847.1 + 33521 0.69 0.22969
Target:  5'- gGCGCCgCCgcggaGGCGccgGGCGC-GGGcGCCGa -3'
miRNA:   3'- gCGCGG-GG-----UCGCa--CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 33616 0.7 0.214421
Target:  5'- gGaCGCCCUGGCGacgGGCGC-GGcGGCUGa -3'
miRNA:   3'- gC-GCGGGGUCGCa--CCGCGaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 33697 0.67 0.320103
Target:  5'- gGCGCUCgCGGCGcggcGGCGCgu-GGCCGa -3'
miRNA:   3'- gCGCGGG-GUCGCa---CCGCGaccCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.