miRNA display CGI


Results 121 - 140 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 33967 0.68 0.274916
Target:  5'- aGCGCgCUGGCGccgGGCGCgcuGGCCGg -3'
miRNA:   3'- gCGCGgGGUCGCa--CCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34074 0.67 0.326995
Target:  5'- cCG-GCCCCcGCGgcGGCcCcGGGGCCGg -3'
miRNA:   3'- -GCgCGGGGuCGCa-CCGcGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34157 0.74 0.107143
Target:  5'- gCGCGCUgCgcgaGGCGgcugaGGCGCUGcGGGCCGg -3'
miRNA:   3'- -GCGCGGgG----UCGCa----CCGCGAC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34263 0.73 0.127168
Target:  5'- gGCGCagaCCGGCGcgcGGCgGCUGGGcGCCGc -3'
miRNA:   3'- gCGCGg--GGUCGCa--CCG-CGACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 34271 0.71 0.185179
Target:  5'- cCGCGCCCCugccgccgacccccGGCGggccGGCGCUccGGcccuGGCCGg -3'
miRNA:   3'- -GCGCGGGG--------------UCGCa---CCGCGA--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34355 0.68 0.306647
Target:  5'- -aCGCCaugaCGGCG-GGCGCUGaugcGGCCGa -3'
miRNA:   3'- gcGCGGg---GUCGCaCCGCGACc---CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34397 0.71 0.177915
Target:  5'- cCGcCGCCgCGGCagacgcGGCGCUGGGGgCGg -3'
miRNA:   3'- -GC-GCGGgGUCGca----CCGCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 34536 0.73 0.130298
Target:  5'- uGCGCCgCCcGcCG-GGCGCuUGGGGCCa -3'
miRNA:   3'- gCGCGG-GGuC-GCaCCGCG-ACCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 34590 0.68 0.293629
Target:  5'- gCGCaagGCCCgGGCGcUGGCGCggcGGcGcGCCGa -3'
miRNA:   3'- -GCG---CGGGgUCGC-ACCGCGa--CC-C-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 35498 0.72 0.154264
Target:  5'- gCGCGCguuaugCUCGGCGUGcGCGCcGGGGCUu -3'
miRNA:   3'- -GCGCG------GGGUCGCAC-CGCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 35619 0.79 0.044493
Target:  5'- aCGcCGCCgCCGGC--GGCGCUGGGGCCa -3'
miRNA:   3'- -GC-GCGG-GGUCGcaCCGCGACCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 36007 0.81 0.031912
Target:  5'- gGCgGCCgCgGGCGUGGUGCUGGGGCUGc -3'
miRNA:   3'- gCG-CGG-GgUCGCACCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 36087 0.66 0.393893
Target:  5'- aCGCGCggcuggcggagCgCGGCGacGCGCUGGGcGCCu -3'
miRNA:   3'- -GCGCG-----------GgGUCGCacCGCGACCC-CGGc -5'
6567 3' -67.3 NC_001847.1 + 36681 0.73 0.131569
Target:  5'- uGCGCCCCccgcuggacgagagcGGCGUGGUGgaGGcGGCUu -3'
miRNA:   3'- gCGCGGGG---------------UCGCACCGCgaCC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 36819 0.68 0.300084
Target:  5'- uGCGCCaCCGGCGcGcCGaCUgGGGGCUGg -3'
miRNA:   3'- gCGCGG-GGUCGCaCcGC-GA-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 37034 0.66 0.401855
Target:  5'- gGCGCCgggcucgcacuCUAGCcUGG-GCUGGGGgCGg -3'
miRNA:   3'- gCGCGG-----------GGUCGcACCgCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 37135 0.69 0.245868
Target:  5'- gCGCGCacgCCCAGCG-GGCcuUUGGGGCgGc -3'
miRNA:   3'- -GCGCG---GGGUCGCaCCGc-GACCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 37324 0.66 0.401855
Target:  5'- gCGCGCCgagcaCAGCGcUGGCGUgcggucaugcgGcGGGUCGa -3'
miRNA:   3'- -GCGCGGg----GUCGC-ACCGCGa----------C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 38750 0.68 0.287283
Target:  5'- uGCGa-CCAGCGUGGCGgc-GGGCCc -3'
miRNA:   3'- gCGCggGGUCGCACCGCgacCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 39126 0.68 0.268894
Target:  5'- gGCGgCCgAcGCGccGCGCUGGGGCuCGa -3'
miRNA:   3'- gCGCgGGgU-CGCacCGCGACCCCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.