miRNA display CGI


Results 141 - 160 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 39835 0.66 0.393893
Target:  5'- aGCGCuUCCuGCGUGGCGCgcgccaGCCGc -3'
miRNA:   3'- gCGCG-GGGuCGCACCGCGaccc--CGGC- -5'
6567 3' -67.3 NC_001847.1 + 41584 0.69 0.255448
Target:  5'- gCGCGCCuuaaacuuggCCGGCucggcacguaacccgGGCGCUccGGGGCCGc -3'
miRNA:   3'- -GCGCGG----------GGUCGca-------------CCGCGA--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 41593 0.66 0.378281
Target:  5'- uGCGUCgaggCCAGCGUGGCGUUGuucugcuccGCCGu -3'
miRNA:   3'- gCGCGG----GGUCGCACCGCGACcc-------CGGC- -5'
6567 3' -67.3 NC_001847.1 + 42052 0.72 0.143538
Target:  5'- -cCGCCCCGcuuuGCG-GGCGCgcgcgGGGGCCu -3'
miRNA:   3'- gcGCGGGGU----CGCaCCGCGa----CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 42095 0.67 0.341106
Target:  5'- uCGCgGUgCCGGCaccGUccaGGCGCcgGGGGCCGc -3'
miRNA:   3'- -GCG-CGgGGUCG---CA---CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 42156 0.68 0.281046
Target:  5'- gGCGCCuggacguugCCGGCG-GGUGCUGGcggaaugcgaGGCCu -3'
miRNA:   3'- gCGCGG---------GGUCGCaCCGCGACC----------CCGGc -5'
6567 3' -67.3 NC_001847.1 + 42342 0.67 0.348326
Target:  5'- gGCGCCC--GUGUGGCGC-GGcGGCg- -3'
miRNA:   3'- gCGCGGGguCGCACCGCGaCC-CCGgc -5'
6567 3' -67.3 NC_001847.1 + 42475 0.67 0.353444
Target:  5'- cCGCGCCCCGuacgucGCGUuugacccGGCGCUGuugaaggaaaacGGCCa -3'
miRNA:   3'- -GCGCGGGGU------CGCA-------CCGCGACc-----------CCGGc -5'
6567 3' -67.3 NC_001847.1 + 42880 0.67 0.341106
Target:  5'- cCGCGCCacgCUAGUG-GGCGCcuuugcgacucGGGGCUGa -3'
miRNA:   3'- -GCGCGG---GGUCGCaCCGCGa----------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 43001 0.67 0.320103
Target:  5'- -aCGCCgCCGGgGgGGCGCgccGGGCCGc -3'
miRNA:   3'- gcGCGG-GGUCgCaCCGCGac-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 43004 0.68 0.287283
Target:  5'- gCGgGCCCC-GCGgacGGCGgaaUUGGGGCaCGa -3'
miRNA:   3'- -GCgCGGGGuCGCa--CCGC---GACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 43246 0.67 0.326995
Target:  5'- gGCGCgCgGGCGgcgcGGCGCccggGGGGCa- -3'
miRNA:   3'- gCGCGgGgUCGCa---CCGCGa---CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 43588 1.08 0.000305
Target:  5'- gCGCGCCCCAGCGUGGCGCUGGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGCACCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 44035 0.73 0.130298
Target:  5'- aGgGCUgCAGCGaGGCGCgcgucGGGGCCGc -3'
miRNA:   3'- gCgCGGgGUCGCaCCGCGa----CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 44292 0.69 0.240373
Target:  5'- gGCGgCgCGGCGcGGCGCgGcGGGCCa -3'
miRNA:   3'- gCGCgGgGUCGCaCCGCGaC-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 44329 0.66 0.370632
Target:  5'- gGUGCCCgCcgGGCGUGauuaacGCGCgcccGGGGCUGc -3'
miRNA:   3'- gCGCGGG-G--UCGCAC------CGCGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 44379 0.67 0.348326
Target:  5'- uGCGCCUCAag--GGCGCUcccgcucccGGGGCCc -3'
miRNA:   3'- gCGCGGGGUcgcaCCGCGA---------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 44416 0.66 0.386035
Target:  5'- aCGCGCCgCgAGCGgcugcguucGCGCacgGGGGCgCGg -3'
miRNA:   3'- -GCGCGG-GgUCGCac-------CGCGa--CCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 44823 0.68 0.300084
Target:  5'- cCGCGCCCCAGuCGgcaaugGGCGC---GGUCGc -3'
miRNA:   3'- -GCGCGGGGUC-GCa-----CCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 45048 0.66 0.38137
Target:  5'- aGCGCCCCccGCgGUGGCGUcccagagccaguauuUGuuGGCCGa -3'
miRNA:   3'- gCGCGGGGu-CG-CACCGCG---------------ACc-CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.