miRNA display CGI


Results 61 - 80 of 411 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 116560 0.71 0.19091
Target:  5'- uGUGCCUgGGCGacuuUGGCGCggcacacGGGCCGg -3'
miRNA:   3'- gCGCGGGgUCGC----ACCGCGac-----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 116435 0.7 0.209528
Target:  5'- gGCGCUCCccgcGGCGcUGGCGgUGacgcGGGCCGu -3'
miRNA:   3'- gCGCGGGG----UCGC-ACCGCgAC----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 116428 0.66 0.378281
Target:  5'- gCGCGCUUgGGCucgagGGCGgUGGGcGCUGg -3'
miRNA:   3'- -GCGCGGGgUCGca---CCGCgACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 116389 0.66 0.393893
Target:  5'- cCGCcuuaGCCgCGGCGgcGGCGCUcuGGGCCc -3'
miRNA:   3'- -GCG----CGGgGUCGCa-CCGCGAc-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 116148 0.69 0.234981
Target:  5'- gCGCGgCCCGa---GGCGCUGGcGGCCGc -3'
miRNA:   3'- -GCGCgGGGUcgcaCCGCGACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 115294 0.66 0.370632
Target:  5'- gGCGCCCC--CG-GGCGC--GGGCCa -3'
miRNA:   3'- gCGCGGGGucGCaCCGCGacCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 115276 0.68 0.306647
Target:  5'- aGCGCCgCCaugaugAGCGUguccacagcGGCGCcggaGGGGCUGa -3'
miRNA:   3'- gCGCGG-GG------UCGCA---------CCGCGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 115107 0.68 0.306647
Target:  5'- cCGCGCCCagGGCGgcGGcCGCa-GGGCCGc -3'
miRNA:   3'- -GCGCGGGg-UCGCa-CC-GCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 113538 0.72 0.15061
Target:  5'- aGCGCCgCCAGCGaguuuaggGGgGC-GGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa-------CCgCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 113430 0.69 0.245868
Target:  5'- cCGCGCCCU-GC-UGGCGCUGGuccuccGGCUc -3'
miRNA:   3'- -GCGCGGGGuCGcACCGCGACC------CCGGc -5'
6567 3' -67.3 NC_001847.1 + 113366 0.68 0.281046
Target:  5'- cCGCGCCcggCCGGCGccgggcccGGCGCcGGcGGCCc -3'
miRNA:   3'- -GCGCGG---GGUCGCa-------CCGCGaCC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 112761 0.68 0.293629
Target:  5'- uCGCGaCCCCGGCc---CGCgGGGGCCu -3'
miRNA:   3'- -GCGC-GGGGUCGcaccGCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 111280 0.67 0.320103
Target:  5'- gGCGCCgggCCGGgGgcGGCGCUcggccgggggcGGGGCCc -3'
miRNA:   3'- gCGCGG---GGUCgCa-CCGCGA-----------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 108753 0.69 0.25717
Target:  5'- gGCGUUCCuGCc--GCGCUGGGcGCCGg -3'
miRNA:   3'- gCGCGGGGuCGcacCGCGACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 108620 0.66 0.389166
Target:  5'- aCGUGCUCCGGgGgacggcgGGCgacgcugcagaagugGCcGGGGCCGc -3'
miRNA:   3'- -GCGCGGGGUCgCa------CCG---------------CGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 108249 0.66 0.378281
Target:  5'- uCGCucCCCCuGCGUguugcccgacGGCGgUGGcGGCCGc -3'
miRNA:   3'- -GCGc-GGGGuCGCA----------CCGCgACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 108059 0.75 0.096588
Target:  5'- gCGaCGCCuCCAGCGUgGGCGCggugccgcccggGGGGCUGc -3'
miRNA:   3'- -GC-GCGG-GGUCGCA-CCGCGa-----------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 107779 0.79 0.051827
Target:  5'- gCGCGCCCgGGgG-GGCaGCUGGGGCUGc -3'
miRNA:   3'- -GCGCGGGgUCgCaCCG-CGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 107463 0.66 0.401855
Target:  5'- gCGCGCCUCAGCccgacGCGCcGcgucgagcaGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGcac--CGCGaC---------CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 107289 0.66 0.393893
Target:  5'- gGCGCCCCccGCGUcccuGGCGCcGGcguccucGCCGa -3'
miRNA:   3'- gCGCGGGGu-CGCA----CCGCGaCCc------CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.