miRNA display CGI


Results 81 - 100 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 107162 0.67 0.318057
Target:  5'- gCGCGgCCCAGCGcGGCGCcacGaagucuagcgagcuGGGCCc -3'
miRNA:   3'- -GCGCgGGGUCGCaCCGCGa--C--------------CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 106810 0.7 0.224501
Target:  5'- gCGCgGCCCC-GCGgGGCGCcGGGcCCGg -3'
miRNA:   3'- -GCG-CGGGGuCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 106772 0.76 0.085732
Target:  5'- gGCGCCgucuCCGGCGcgagGGCGCcgGGGGCCc -3'
miRNA:   3'- gCGCGG----GGUCGCa---CCGCGa-CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 106709 0.7 0.209528
Target:  5'- gGCGCCgCGGCGUagccaGCGC-GGGcGCCGg -3'
miRNA:   3'- gCGCGGgGUCGCAc----CGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 106664 0.69 0.25717
Target:  5'- gGCGCCgCGGCGUccgcGGCGCgucgugccacGGcGGCCa -3'
miRNA:   3'- gCGCGGgGUCGCA----CCGCGa---------CC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 106619 0.69 0.262979
Target:  5'- aCGCGgCCgGGCGgcggcgGcGCGCUGccGGGCCa -3'
miRNA:   3'- -GCGCgGGgUCGCa-----C-CGCGAC--CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 106286 0.71 0.177915
Target:  5'- aGCGCCgCCGGCGUcGCGCgcgcGGCCGc -3'
miRNA:   3'- gCGCGG-GGUCGCAcCGCGacc-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 106109 0.67 0.333996
Target:  5'- gCGCGCagCUCGGCGagcgcGGCGC-GGGcGCCGc -3'
miRNA:   3'- -GCGCG--GGGUCGCa----CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 106054 0.69 0.245314
Target:  5'- cCGCGCCgugcucgCCGGCGgcaggGGCGCcGGcGCCGc -3'
miRNA:   3'- -GCGCGG-------GGUCGCa----CCGCGaCCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105951 0.66 0.386035
Target:  5'- cCGgGagCCCGGCGgcgccggcGGCGCgGcGGGCCGc -3'
miRNA:   3'- -GCgCg-GGGUCGCa-------CCGCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105884 0.72 0.165711
Target:  5'- uGCGCCgCCAGCGcguccGGCGCgcaGGccgcGGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCa----CCGCGa--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105776 0.71 0.177915
Target:  5'- gGcCGCCUCGGCGgcaGCGCcgccGGGGCCGc -3'
miRNA:   3'- gC-GCGGGGUCGCac-CGCGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105717 0.67 0.320103
Target:  5'- -aCGCCCCAGCGcucgcUGGCGCgcaGGUCa -3'
miRNA:   3'- gcGCGGGGUCGC-----ACCGCGaccCCGGc -5'
6567 3' -67.3 NC_001847.1 + 105669 0.66 0.401855
Target:  5'- gCGCGCgCCAGCGcccaGGCcgacGC-GcGGGCCGc -3'
miRNA:   3'- -GCGCGgGGUCGCa---CCG----CGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105558 0.67 0.31332
Target:  5'- gGC-CCCCGGCccGGCGCgGcGGcGCCGg -3'
miRNA:   3'- gCGcGGGGUCGcaCCGCGaC-CC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 105035 0.7 0.20003
Target:  5'- --gGCCgCCAGCGccgcGGCGCUGGGcGCgGg -3'
miRNA:   3'- gcgCGG-GGUCGCa---CCGCGACCC-CGgC- -5'
6567 3' -67.3 NC_001847.1 + 104899 0.7 0.219411
Target:  5'- aGCGCCCC-GCGgggcccGCGCggcgGcGGGCCGc -3'
miRNA:   3'- gCGCGGGGuCGCac----CGCGa---C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 104517 0.66 0.362341
Target:  5'- gGCgGCCgCC-GCGUuugcGGCGCUgcgcggcggccccGGGGCCGc -3'
miRNA:   3'- gCG-CGG-GGuCGCA----CCGCGA-------------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 104395 0.7 0.20003
Target:  5'- gCGCGCgCCAGCGcGcCGCUcGGGCCa -3'
miRNA:   3'- -GCGCGgGGUCGCaCcGCGAcCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 104369 0.76 0.079547
Target:  5'- cCGCGCCCgCAgacGCGcGGCGCUGcagcGGGCCGc -3'
miRNA:   3'- -GCGCGGG-GU---CGCaCCGCGAC----CCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.