miRNA display CGI


Results 101 - 120 of 411 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 104337 0.68 0.281046
Target:  5'- gGCgGCCUCGGCGcgcgcgaaGGCGCccGGGCCGa -3'
miRNA:   3'- gCG-CGGGGUCGCa-------CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 104086 0.7 0.209528
Target:  5'- aGC-CCCCAGCGguuggcGGCGC-GGuGGCUGg -3'
miRNA:   3'- gCGcGGGGUCGCa-----CCGCGaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103942 0.68 0.286654
Target:  5'- cCGCGCCCuCAGCGagagcaccgucgaUGGCGUcGGcGCCc -3'
miRNA:   3'- -GCGCGGG-GUCGC-------------ACCGCGaCCcCGGc -5'
6567 3' -67.3 NC_001847.1 + 103889 0.69 0.262979
Target:  5'- cCGCGUCCCAGUccacgccgGGCGCcGcGGCCGc -3'
miRNA:   3'- -GCGCGGGGUCGca------CCGCGaCcCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103688 0.7 0.214421
Target:  5'- aCGCGCggCGGCGgcccGCGCcGGGGCCGc -3'
miRNA:   3'- -GCGCGggGUCGCac--CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103097 0.67 0.348326
Target:  5'- cCGCGCCCCGGaccuuuCGCgGGGGCUu -3'
miRNA:   3'- -GCGCGGGGUCgcacc-GCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 103056 0.75 0.101988
Target:  5'- uCGCGCCCCGacGCccGGCGCccaGGGGCCc -3'
miRNA:   3'- -GCGCGGGGU--CGcaCCGCGa--CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 103020 0.68 0.300084
Target:  5'- gGCG-CCCAGCGccGGCgGCggGcGGGCCGc -3'
miRNA:   3'- gCGCgGGGUCGCa-CCG-CGa-C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103016 0.67 0.31332
Target:  5'- -cCGCCCCcGCccccGGCGCccgGGGGCCc -3'
miRNA:   3'- gcGCGGGGuCGca--CCGCGa--CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 102934 0.72 0.15061
Target:  5'- cCGCGCCCCGGCcccgcccgcgGGCcucgggccccgGCcggGGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGca--------CCG-----------CGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 102826 0.67 0.324225
Target:  5'- gCGUGUUCCAGCGggucccguuccgcGGCgGCgucgcGGGGCCGc -3'
miRNA:   3'- -GCGCGGGGUCGCa------------CCG-CGa----CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 102788 0.71 0.186488
Target:  5'- gGCGCCCCccGCGcgGGgGCUGGGcccccuccgcGCCGc -3'
miRNA:   3'- gCGCGGGGu-CGCa-CCgCGACCC----------CGGC- -5'
6567 3' -67.3 NC_001847.1 + 102642 0.66 0.393893
Target:  5'- gCGCGUCUCGGgGUGacGCGCcgGGagcGGCCGc -3'
miRNA:   3'- -GCGCGGGGUCgCAC--CGCGa-CC---CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 101912 0.67 0.341106
Target:  5'- gGCGCCgCGGCGcccGGCGC-GGcGCCa -3'
miRNA:   3'- gCGCGGgGUCGCa--CCGCGaCCcCGGc -5'
6567 3' -67.3 NC_001847.1 + 101111 0.66 0.38137
Target:  5'- gCGCGUucgccgucaggUCUaucacuguggagaugGGCGcgGGgGCUGGGGCCGg -3'
miRNA:   3'- -GCGCG-----------GGG---------------UCGCa-CCgCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 101076 0.7 0.226564
Target:  5'- aCGCGCUCC-GCGUGccccucgaaaaacgcGCGCgccgcGGGGCCc -3'
miRNA:   3'- -GCGCGGGGuCGCAC---------------CGCGa----CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 101064 0.68 0.287283
Target:  5'- gGCcgGCCCCGGgGccGcCGCgGGGGCCGg -3'
miRNA:   3'- gCG--CGGGGUCgCacC-GCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 100623 0.66 0.375208
Target:  5'- uCGgGCCCUGGCGaccgccuggcugcGGCGCcaGGGCCGc -3'
miRNA:   3'- -GCgCGGGGUCGCa------------CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 100508 0.66 0.386035
Target:  5'- gGCGgUgCGGUGUGGUggGCUGcGGGUCGc -3'
miRNA:   3'- gCGCgGgGUCGCACCG--CGAC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 100435 0.67 0.325608
Target:  5'- aCGCGCUCCAGCGcGGCGCgcaaguccucGcGCCa -3'
miRNA:   3'- -GCGCGGGGUCGCaCCGCGacc-------C-CGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.