miRNA display CGI


Results 121 - 140 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 99589 0.7 0.224501
Target:  5'- gCGCGCaCgCCaAGCuUGGCGC-GGGGCUGc -3'
miRNA:   3'- -GCGCG-G-GG-UCGcACCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 99440 0.69 0.22969
Target:  5'- aCGCuGCgCCAGCGUGggaguugcgcaGCGCgccgcucGGGGCCa -3'
miRNA:   3'- -GCG-CGgGGUCGCAC-----------CGCGa------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 98758 0.68 0.281046
Target:  5'- cCGuCGCCgCGGCGc-GCGCUGcccGGGCCGc -3'
miRNA:   3'- -GC-GCGGgGUCGCacCGCGAC---CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 98229 0.67 0.333996
Target:  5'- aGCGCgCCCAGggaggcgacgcCGUGGCGgC-GGGGCa- -3'
miRNA:   3'- gCGCG-GGGUC-----------GCACCGC-GaCCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 97454 0.66 0.370632
Target:  5'- gCGCGCCgCAGCc--GCGCcaGGGCCGc -3'
miRNA:   3'- -GCGCGGgGUCGcacCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 96770 0.77 0.065075
Target:  5'- gGUGCCagugCCGGUGccGGCGCUGGGGCUGa -3'
miRNA:   3'- gCGCGG----GGUCGCa-CCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 96648 0.67 0.348326
Target:  5'- aCGCGUCgugcgcgggggCCGGCGgguacgcgucGuGCGCgGGGGCCGg -3'
miRNA:   3'- -GCGCGG-----------GGUCGCa---------C-CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 96609 0.67 0.348326
Target:  5'- aCGCGgguuuUCCUugcGCGU-GCGCgGGGGCCGg -3'
miRNA:   3'- -GCGC-----GGGGu--CGCAcCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 96013 0.73 0.133498
Target:  5'- uCGaGCCCCAGCGcGGCGCgucGGCCGc -3'
miRNA:   3'- -GCgCGGGGUCGCaCCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 95553 0.8 0.043374
Target:  5'- cCGCGCCgCAGCa--GCGCUGGGGCCa -3'
miRNA:   3'- -GCGCGGgGUCGcacCGCGACCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 95501 0.69 0.233383
Target:  5'- uGCGCCgCCcgugggccuGGCG-GGCGCgccaggcuugccccUGGGGCUGg -3'
miRNA:   3'- gCGCGG-GG---------UCGCaCCGCG--------------ACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 95382 0.67 0.341106
Target:  5'- cCGCGCCgCCGGCucugaggccGGCGCcGGGGacaaCGa -3'
miRNA:   3'- -GCGCGG-GGUCGca-------CCGCGaCCCCg---GC- -5'
6567 3' -67.3 NC_001847.1 + 95307 0.72 0.147035
Target:  5'- gGCGCCuCCAGgCGcGGCGCcggcaGGGCCGa -3'
miRNA:   3'- gCGCGG-GGUC-GCaCCGCGac---CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 95157 0.67 0.341106
Target:  5'- gGUGCCggcaUGGCGgggGGCGCgaucgGGGGCgCGa -3'
miRNA:   3'- gCGCGGg---GUCGCa--CCGCGa----CCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 95088 0.69 0.234981
Target:  5'- gGCGCU--GGCGUGGCGg-GGGGCgCGa -3'
miRNA:   3'- gCGCGGggUCGCACCGCgaCCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 94039 0.66 0.386035
Target:  5'- cCGCGCCaaCCAcGUGcaGGCGCagcuGGGCCGg -3'
miRNA:   3'- -GCGCGG--GGU-CGCa-CCGCGac--CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 92267 0.72 0.165711
Target:  5'- gGCGCCCacUAGCGUGGCGC-GGuGCgCGg -3'
miRNA:   3'- gCGCGGG--GUCGCACCGCGaCCcCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 92147 0.72 0.165711
Target:  5'- gCGCGCCCCcccggcGGCGUucccGGCGUUGuuGCCGg -3'
miRNA:   3'- -GCGCGGGG------UCGCA----CCGCGACccCGGC- -5'
6567 3' -67.3 NC_001847.1 + 91553 0.72 0.143538
Target:  5'- cCG-GCCCCAGCGccaCGCUGGGGCgCGc -3'
miRNA:   3'- -GCgCGGGGUCGCaccGCGACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 90866 0.66 0.379051
Target:  5'- cCGCGCCgCCGGUGUGGUagaucGCcguaaucaccgacggGGGGuuGc -3'
miRNA:   3'- -GCGCGG-GGUCGCACCG-----CGa--------------CCCCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.