miRNA display CGI


Results 41 - 60 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 22181 0.72 0.147035
Target:  5'- uCGCGCCgCGaauGCGcgGGCGCU-GGGCCGu -3'
miRNA:   3'- -GCGCGGgGU---CGCa-CCGCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103056 0.75 0.101988
Target:  5'- uCGCGCCCCGacGCccGGCGCccaGGGGCCc -3'
miRNA:   3'- -GCGCGGGGU--CGcaCCGCGa--CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 24170 0.8 0.043818
Target:  5'- gCGCGCagccguacucgcaCAGCGUGGCGCUGGuGGCCa -3'
miRNA:   3'- -GCGCGgg-----------GUCGCACCGCGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 42052 0.72 0.143538
Target:  5'- -cCGCCCCGcuuuGCG-GGCGCgcgcgGGGGCCu -3'
miRNA:   3'- gcGCGGGGU----CGCaCCGCGa----CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 36007 0.81 0.031912
Target:  5'- gGCgGCCgCgGGCGUGGUGCUGGGGCUGc -3'
miRNA:   3'- gCG-CGG-GgUCGCACCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 116560 0.71 0.19091
Target:  5'- uGUGCCUgGGCGacuuUGGCGCggcacacGGGCCGg -3'
miRNA:   3'- gCGCGGGgUCGC----ACCGCGac-----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 69543 0.79 0.051565
Target:  5'- uCGCGCCCCGGgCGUGGaUGCgcgugugccuggGGGGCCa -3'
miRNA:   3'- -GCGCGGGGUC-GCACC-GCGa-----------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 102788 0.71 0.186488
Target:  5'- gGCGCCCCccGCGcgGGgGCUGGGcccccuccgcGCCGc -3'
miRNA:   3'- gCGCGGGGu-CGCa-CCgCGACCC----------CGGC- -5'
6567 3' -67.3 NC_001847.1 + 34397 0.71 0.177915
Target:  5'- cCGcCGCCgCGGCagacgcGGCGCUGGGGgCGg -3'
miRNA:   3'- -GC-GCGGgGUCGca----CCGCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 134764 0.71 0.169693
Target:  5'- gCGCGgUCCGGCGcgcGGCGCgcGGGGCgGg -3'
miRNA:   3'- -GCGCgGGGUCGCa--CCGCGa-CCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 73709 0.72 0.161813
Target:  5'- cCGCGCCCggCGGCGcggccgcgGGCGUcGaGGGCCGg -3'
miRNA:   3'- -GCGCGGG--GUCGCa-------CCGCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 86039 0.72 0.154264
Target:  5'- uGCGCUgguUgGGCGaGGCGCUgGGGGCCa -3'
miRNA:   3'- gCGCGG---GgUCGCaCCGCGA-CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 113538 0.72 0.15061
Target:  5'- aGCGCCgCCAGCGaguuuaggGGgGC-GGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa-------CCgCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 34536 0.73 0.130298
Target:  5'- uGCGCCgCCcGcCG-GGCGCuUGGGGCCa -3'
miRNA:   3'- gCGCGG-GGuC-GCaCCGCG-ACCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 21511 0.73 0.124109
Target:  5'- gCGCGCCUCGGCGggGGcCGC-GcGGGCCa -3'
miRNA:   3'- -GCGCGGGGUCGCa-CC-GCGaC-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 8107 0.73 0.121117
Target:  5'- aCGCGgCgCCAGCGcaGGCGC-GGGGCCc -3'
miRNA:   3'- -GCGCgG-GGUCGCa-CCGCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 66326 0.74 0.104536
Target:  5'- gGCGCCCUgcGGCGgguggGGCGC-GGGcGCCGc -3'
miRNA:   3'- gCGCGGGG--UCGCa----CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 106772 0.76 0.085732
Target:  5'- gGCGCCgucuCCGGCGcgagGGCGCcgGGGGCCc -3'
miRNA:   3'- gCGCGG----GGUCGCa---CCGCGa-CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 64448 0.76 0.079547
Target:  5'- gGCGCCCCcgccgccgcccGCGgcGGCGCggGGGGCCGa -3'
miRNA:   3'- gCGCGGGGu----------CGCa-CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 122849 0.78 0.058825
Target:  5'- cCGCGCCCUGGCuuGUGGUGCUGGuGGgCGc -3'
miRNA:   3'- -GCGCGGGGUCG--CACCGCGACC-CCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.