miRNA display CGI


Results 61 - 80 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 113538 0.72 0.15061
Target:  5'- aGCGCCgCCAGCGaguuuaggGGgGC-GGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa-------CCgCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 11312 0.72 0.157998
Target:  5'- gCGCGCCCgccgaggcCGGCG-GGCgGCUGGcGCCGg -3'
miRNA:   3'- -GCGCGGG--------GUCGCaCCG-CGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 107779 0.79 0.051827
Target:  5'- gCGCGCCCgGGgG-GGCaGCUGGGGCUGc -3'
miRNA:   3'- -GCGCGGGgUCgCaCCG-CGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30160 0.77 0.068263
Target:  5'- uGCGCCCUggguGCGUGGCGCUcGGcggaccuGGCCGa -3'
miRNA:   3'- gCGCGGGGu---CGCACCGCGA-CC-------CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 14557 0.76 0.08156
Target:  5'- cCGCGCCgCAGCGcgGGUGCUGGcGGgCGc -3'
miRNA:   3'- -GCGCGGgGUCGCa-CCGCGACC-CCgGC- -5'
6567 3' -67.3 NC_001847.1 + 78669 0.75 0.090107
Target:  5'- uGCGUCgCCGGCGUgcgcacgcgGGCGCUGGuGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCA---------CCGCGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34157 0.74 0.107143
Target:  5'- gCGCGCUgCgcgaGGCGgcugaGGCGCUGcGGGCCGg -3'
miRNA:   3'- -GCGCGGgG----UCGCa----CCGCGAC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 65114 0.73 0.121117
Target:  5'- cCGCGgCUCGGC-UGGCGgUGGGGCuCGg -3'
miRNA:   3'- -GCGCgGGGUCGcACCGCgACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 75107 0.73 0.126551
Target:  5'- gGCGCCCCGGCGcuugcccgagaaGGCccgggccccGCcGGGGCCGg -3'
miRNA:   3'- gCGCGGGGUCGCa-----------CCG---------CGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 36681 0.73 0.131569
Target:  5'- uGCGCCCCccgcuggacgagagcGGCGUGGUGgaGGcGGCUu -3'
miRNA:   3'- gCGCGGGG---------------UCGCACCGCgaCC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 80371 0.69 0.22969
Target:  5'- gCGUGCCCaCGccugggacgaccGUcugGUGGCGCUugGGGGCCGc -3'
miRNA:   3'- -GCGCGGG-GU------------CG---CACCGCGA--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 106810 0.7 0.224501
Target:  5'- gCGCgGCCCC-GCGgGGCGCcGGGcCCGg -3'
miRNA:   3'- -GCG-CGGGGuCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 105884 0.72 0.165711
Target:  5'- uGCGCCgCCAGCGcguccGGCGCgcaGGccgcGGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCa----CCGCGa--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 81324 0.71 0.17376
Target:  5'- aGCGCCCCcGCuccGGCGCgccagGGGGCg- -3'
miRNA:   3'- gCGCGGGGuCGca-CCGCGa----CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 102788 0.71 0.186488
Target:  5'- gGCGCCCCccGCGcgGGgGCUGGGcccccuccgcGCCGc -3'
miRNA:   3'- gCGCGGGGu-CGCa-CCgCGACCC----------CGGC- -5'
6567 3' -67.3 NC_001847.1 + 116560 0.71 0.19091
Target:  5'- uGUGCCUgGGCGacuuUGGCGCggcacacGGGCCGg -3'
miRNA:   3'- gCGCGGGgUCGC----ACCGCGac-----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105035 0.7 0.20003
Target:  5'- --gGCCgCCAGCGccgcGGCGCUGGGcGCgGg -3'
miRNA:   3'- gcgCGG-GGUCGCa---CCGCGACCC-CGgC- -5'
6567 3' -67.3 NC_001847.1 + 116435 0.7 0.209528
Target:  5'- gGCGCUCCccgcGGCGcUGGCGgUGacgcGGGCCGu -3'
miRNA:   3'- gCGCGGGG----UCGC-ACCGCgAC----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103688 0.7 0.214421
Target:  5'- aCGCGCggCGGCGgcccGCGCcGGGGCCGc -3'
miRNA:   3'- -GCGCGggGUCGCac--CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 77840 0.7 0.219411
Target:  5'- uGCGCCaCUGGCcaGcGCGCUGGGGgCGc -3'
miRNA:   3'- gCGCGG-GGUCGcaC-CGCGACCCCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.