Results 81 - 100 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 83921 | 0.71 | 0.172531 |
Target: 5'- gCGCGCCCgCgAGCagggcccgcucgaaGUGcGCGC-GGGGCCGg -3' miRNA: 3'- -GCGCGGG-G-UCG--------------CAC-CGCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 74992 | 0.71 | 0.182157 |
Target: 5'- gGCGCCaggcucaguccgCCGGCG-GGCGg-GGGGCCa -3' miRNA: 3'- gCGCGG------------GGUCGCaCCGCgaCCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 132171 | 0.71 | 0.186488 |
Target: 5'- gCGCgGCCCCGGC--GGCGCUGcGcGCCGa -3' miRNA: 3'- -GCG-CGGGGUCGcaCCGCGACcC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 19016 | 0.7 | 0.20003 |
Target: 5'- gCGCGCCCCAGCGcccGGC-CgaaaGGCCGa -3' miRNA: 3'- -GCGCGGGGUCGCa--CCGcGacc-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 31077 | 0.7 | 0.209528 |
Target: 5'- uCGCaa-CCAGUacgacGcGGCGCUGGGGCCGg -3' miRNA: 3'- -GCGcggGGUCG-----CaCCGCGACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 103688 | 0.7 | 0.214421 |
Target: 5'- aCGCGCggCGGCGgcccGCGCcGGGGCCGc -3' miRNA: 3'- -GCGCGggGUCGCac--CGCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 77840 | 0.7 | 0.219411 |
Target: 5'- uGCGCCaCUGGCcaGcGCGCUGGGGgCGc -3' miRNA: 3'- gCGCGG-GGUCGcaC-CGCGACCCCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 36681 | 0.73 | 0.131569 |
Target: 5'- uGCGCCCCccgcuggacgagagcGGCGUGGUGgaGGcGGCUu -3' miRNA: 3'- gCGCGGGG---------------UCGCACCGCgaCC-CCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 75107 | 0.73 | 0.126551 |
Target: 5'- gGCGCCCCGGCGcuugcccgagaaGGCccgggccccGCcGGGGCCGg -3' miRNA: 3'- gCGCGGGGUCGCa-----------CCG---------CGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 65114 | 0.73 | 0.121117 |
Target: 5'- cCGCGgCUCGGC-UGGCGgUGGGGCuCGg -3' miRNA: 3'- -GCGCgGGGUCGcACCGCgACCCCG-GC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 83572 | 0.69 | 0.238744 |
Target: 5'- gGCuGCCCCGGCGccgcggaagcgcUGGCGagcugcgccgacgcCUGGGcGCCGc -3' miRNA: 3'- gCG-CGGGGUCGC------------ACCGC--------------GACCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 113430 | 0.69 | 0.245868 |
Target: 5'- cCGCGCCCU-GC-UGGCGCUGGuccuccGGCUc -3' miRNA: 3'- -GCGCGGGGuCGcACCGCGACC------CCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 66049 | 0.69 | 0.251467 |
Target: 5'- aCGCGCacgUCGGCGgcGGCGCcGGGGgCGa -3' miRNA: 3'- -GCGCGg--GGUCGCa-CCGCGaCCCCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 74835 | 0.69 | 0.25717 |
Target: 5'- gGCGCCCau-CGUGGUGCgcuuuaGGGGCgGc -3' miRNA: 3'- gCGCGGGgucGCACCGCGa-----CCCCGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 71952 | 0.69 | 0.262979 |
Target: 5'- cCGCGCCgCAcGuCGUGGCGC-GGcgcgagcuGGCCGa -3' miRNA: 3'- -GCGCGGgGU-C-GCACCGCGaCC--------CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 107779 | 0.79 | 0.051827 |
Target: 5'- gCGCGCCCgGGgG-GGCaGCUGGGGCUGc -3' miRNA: 3'- -GCGCGGGgUCgCaCCG-CGACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 30160 | 0.77 | 0.068263 |
Target: 5'- uGCGCCCUggguGCGUGGCGCUcGGcggaccuGGCCGa -3' miRNA: 3'- gCGCGGGGu---CGCACCGCGA-CC-------CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 14557 | 0.76 | 0.08156 |
Target: 5'- cCGCGCCgCAGCGcgGGUGCUGGcGGgCGc -3' miRNA: 3'- -GCGCGGgGUCGCa-CCGCGACC-CCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 78669 | 0.75 | 0.090107 |
Target: 5'- uGCGUCgCCGGCGUgcgcacgcgGGCGCUGGuGCCGg -3' miRNA: 3'- gCGCGG-GGUCGCA---------CCGCGACCcCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 34157 | 0.74 | 0.107143 |
Target: 5'- gCGCGCUgCgcgaGGCGgcugaGGCGCUGcGGGCCGg -3' miRNA: 3'- -GCGCGGgG----UCGCa----CCGCGAC-CCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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