miRNA display CGI


Results 101 - 120 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 54501 0.69 0.25717
Target:  5'- gGCGCCggggCCGGgGUggggGGCGgUGGGGCgGg -3'
miRNA:   3'- gCGCGG----GGUCgCA----CCGCgACCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 103889 0.69 0.262979
Target:  5'- cCGCGUCCCAGUccacgccgGGCGCcGcGGCCGc -3'
miRNA:   3'- -GCGCGGGGUCGca------CCGCGaCcCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 13798 0.68 0.268894
Target:  5'- uGCGUagCCGGCGcagcGGUGUacgGGGGCCGg -3'
miRNA:   3'- gCGCGg-GGUCGCa---CCGCGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 124555 0.68 0.274916
Target:  5'- gGCGCCggCCcGCGc-GCGCgggGGGGCCGc -3'
miRNA:   3'- gCGCGG--GGuCGCacCGCGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 113366 0.68 0.281046
Target:  5'- cCGCGCCcggCCGGCGccgggcccGGCGCcGGcGGCCc -3'
miRNA:   3'- -GCGCGG---GGUCGCa-------CCGCGaCC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 19016 0.7 0.20003
Target:  5'- gCGCGCCCCAGCGcccGGC-CgaaaGGCCGa -3'
miRNA:   3'- -GCGCGGGGUCGCa--CCGcGacc-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 132171 0.71 0.186488
Target:  5'- gCGCgGCCCCGGC--GGCGCUGcGcGCCGa -3'
miRNA:   3'- -GCG-CGGGGUCGcaCCGCGACcC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 107779 0.79 0.051827
Target:  5'- gCGCGCCCgGGgG-GGCaGCUGGGGCUGc -3'
miRNA:   3'- -GCGCGGGgUCgCaCCG-CGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30160 0.77 0.068263
Target:  5'- uGCGCCCUggguGCGUGGCGCUcGGcggaccuGGCCGa -3'
miRNA:   3'- gCGCGGGGu---CGCACCGCGA-CC-------CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 14557 0.76 0.08156
Target:  5'- cCGCGCCgCAGCGcgGGUGCUGGcGGgCGc -3'
miRNA:   3'- -GCGCGGgGUCGCa-CCGCGACC-CCgGC- -5'
6567 3' -67.3 NC_001847.1 + 78669 0.75 0.090107
Target:  5'- uGCGUCgCCGGCGUgcgcacgcgGGCGCUGGuGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCA---------CCGCGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34157 0.74 0.107143
Target:  5'- gCGCGCUgCgcgaGGCGgcugaGGCGCUGcGGGCCGg -3'
miRNA:   3'- -GCGCGGgG----UCGCa----CCGCGAC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 65114 0.73 0.121117
Target:  5'- cCGCGgCUCGGC-UGGCGgUGGGGCuCGg -3'
miRNA:   3'- -GCGCgGGGUCGcACCGCgACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 75107 0.73 0.126551
Target:  5'- gGCGCCCCGGCGcuugcccgagaaGGCccgggccccGCcGGGGCCGg -3'
miRNA:   3'- gCGCGGGGUCGCa-----------CCG---------CGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 36681 0.73 0.131569
Target:  5'- uGCGCCCCccgcuggacgagagcGGCGUGGUGgaGGcGGCUu -3'
miRNA:   3'- gCGCGGGG---------------UCGCACCGCgaCC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 102934 0.72 0.15061
Target:  5'- cCGCGCCCCGGCcccgcccgcgGGCcucgggccccgGCcggGGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGca--------CCG-----------CGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30393 0.72 0.157998
Target:  5'- gGCGCagaCGGCGcUGGCGCUGGccGCCGg -3'
miRNA:   3'- gCGCGgg-GUCGC-ACCGCGACCc-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 28864 0.72 0.165711
Target:  5'- gCGCGaCgCCGGC--GGCGCUGGGGCg- -3'
miRNA:   3'- -GCGC-GgGGUCGcaCCGCGACCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 83921 0.71 0.172531
Target:  5'- gCGCGCCCgCgAGCagggcccgcucgaaGUGcGCGC-GGGGCCGg -3'
miRNA:   3'- -GCGCGGG-G-UCG--------------CAC-CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 74992 0.71 0.182157
Target:  5'- gGCGCCaggcucaguccgCCGGCG-GGCGg-GGGGCCa -3'
miRNA:   3'- gCGCGG------------GGUCGCaCCGCgaCCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.