miRNA display CGI


Results 121 - 140 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 121240 0.74 0.112265
Target:  5'- aGCGCCCCAGCcaccgucGUGGCaCUGGGcucCCGg -3'
miRNA:   3'- gCGCGGGGUCG-------CACCGcGACCCc--GGC- -5'
6567 3' -67.3 NC_001847.1 + 79981 0.73 0.121117
Target:  5'- gCGCGCCCC-GCGUcuGGcCGCUGGGGg-- -3'
miRNA:   3'- -GCGCGGGGuCGCA--CC-GCGACCCCggc -5'
6567 3' -67.3 NC_001847.1 + 33967 0.68 0.274916
Target:  5'- aGCGCgCUGGCGccgGGCGCgcuGGCCGg -3'
miRNA:   3'- gCGCGgGGUCGCa--CCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 106619 0.69 0.262979
Target:  5'- aCGCGgCCgGGCGgcggcgGcGCGCUGccGGGCCa -3'
miRNA:   3'- -GCGCgGGgUCGCa-----C-CGCGAC--CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 132277 0.69 0.262979
Target:  5'- gGCGgCCCGcGCGUcGGC-CUGGGcGCUGg -3'
miRNA:   3'- gCGCgGGGU-CGCA-CCGcGACCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 55670 0.72 0.15061
Target:  5'- cCGCGCUCCGGCuc-GCGCaGGcGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGcacCGCGaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 134892 0.72 0.161813
Target:  5'- uCGgGCCCCugGGCGccgGGCGUcGGGGCgCGa -3'
miRNA:   3'- -GCgCGGGG--UCGCa--CCGCGaCCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 105884 0.72 0.165711
Target:  5'- uGCGCCgCCAGCGcguccGGCGCgcaGGccgcGGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCa----CCGCGa--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 34397 0.71 0.177915
Target:  5'- cCGcCGCCgCGGCagacgcGGCGCUGGGGgCGg -3'
miRNA:   3'- -GC-GCGGgGUCGca----CCGCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 102788 0.71 0.186488
Target:  5'- gGCGCCCCccGCGcgGGgGCUGGGcccccuccgcGCCGc -3'
miRNA:   3'- gCGCGGGGu-CGCa-CCgCGACCC----------CGGC- -5'
6567 3' -67.3 NC_001847.1 + 70724 0.71 0.192704
Target:  5'- aCGaCGCgCCGGCaGUGGCGCgcguaaaggcggaccUGGuGGCCGu -3'
miRNA:   3'- -GC-GCGgGGUCG-CACCGCG---------------ACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105035 0.7 0.20003
Target:  5'- --gGCCgCCAGCGccgcGGCGCUGGGcGCgGg -3'
miRNA:   3'- gcgCGG-GGUCGCa---CCGCGACCC-CGgC- -5'
6567 3' -67.3 NC_001847.1 + 106709 0.7 0.209528
Target:  5'- gGCGCCgCGGCGUagccaGCGC-GGGcGCCGg -3'
miRNA:   3'- gCGCGGgGUCGCAc----CGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 103688 0.7 0.214421
Target:  5'- aCGCGCggCGGCGgcccGCGCcGGGGCCGc -3'
miRNA:   3'- -GCGCGggGUCGCac--CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 90811 0.7 0.219411
Target:  5'- gCGCGCguaaucacgCCCGGCGggcaccgcucUGGCGCUGGcccGCCGc -3'
miRNA:   3'- -GCGCG---------GGGUCGC----------ACCGCGACCc--CGGC- -5'
6567 3' -67.3 NC_001847.1 + 106810 0.7 0.224501
Target:  5'- gCGCgGCCCC-GCGgGGCGCcGGGcCCGg -3'
miRNA:   3'- -GCG-CGGGGuCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 134934 0.69 0.234981
Target:  5'- uCGgGCCCCcgGGCGccgGGgGCgGGGGCgGg -3'
miRNA:   3'- -GCgCGGGG--UCGCa--CCgCGaCCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 3954 0.69 0.240373
Target:  5'- gCGCGaCCCaCAGCGccaGCGCgagGuGGGCCGu -3'
miRNA:   3'- -GCGC-GGG-GUCGCac-CGCGa--C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 125031 0.69 0.245868
Target:  5'- aCGCGUCCgugGGCGUGGCGCccgUGuaGCCGa -3'
miRNA:   3'- -GCGCGGGg--UCGCACCGCG---ACccCGGC- -5'
6567 3' -67.3 NC_001847.1 + 90220 0.69 0.25717
Target:  5'- aGCGCCCCAGCGacacGGuCGC---GGCCGc -3'
miRNA:   3'- gCGCGGGGUCGCa---CC-GCGaccCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.