miRNA display CGI


Results 141 - 160 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 130774 0.67 0.333996
Target:  5'- gCGCGCUCgCGGuCGcGGUGgaGGcGGCCGc -3'
miRNA:   3'- -GCGCGGG-GUC-GCaCCGCgaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 118661 0.67 0.333996
Target:  5'- aGUGCCCCacccaggcagGGCG-GGgGUU-GGGCCGg -3'
miRNA:   3'- gCGCGGGG----------UCGCaCCgCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 88694 0.68 0.274916
Target:  5'- aGUGCCCUGGC--GGCGCUGcgcgcgcagauuGGGCCc -3'
miRNA:   3'- gCGCGGGGUCGcaCCGCGAC------------CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 13798 0.68 0.268894
Target:  5'- uGCGUagCCGGCGcagcGGUGUacgGGGGCCGg -3'
miRNA:   3'- gCGCGg-GGUCGCa---CCGCGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 74835 0.69 0.25717
Target:  5'- gGCGCCCau-CGUGGUGCgcuuuaGGGGCgGc -3'
miRNA:   3'- gCGCGGGgucGCACCGCGa-----CCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 90220 0.69 0.25717
Target:  5'- aGCGCCCCAGCGacacGGuCGC---GGCCGc -3'
miRNA:   3'- gCGCGGGGUCGCa---CC-GCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 113430 0.69 0.245868
Target:  5'- cCGCGCCCU-GC-UGGCGCUGGuccuccGGCUc -3'
miRNA:   3'- -GCGCGGGGuCGcACCGCGACC------CCGGc -5'
6567 3' -67.3 NC_001847.1 + 3954 0.69 0.240373
Target:  5'- gCGCGaCCCaCAGCGccaGCGCgagGuGGGCCGu -3'
miRNA:   3'- -GCGC-GGG-GUCGCac-CGCGa--C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 45254 0.69 0.230215
Target:  5'- uGCGCCgCCGGCGUGaGCGCggcgaagcccgccgcGGcGaGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCAC-CGCGa--------------CC-C-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 33521 0.69 0.22969
Target:  5'- gGCGCCgCCgcggaGGCGccgGGCGC-GGGcGCCGa -3'
miRNA:   3'- gCGCGG-GG-----UCGCa--CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 113366 0.68 0.281046
Target:  5'- cCGCGCCcggCCGGCGccgggcccGGCGCcGGcGGCCc -3'
miRNA:   3'- -GCGCGG---GGUCGCa-------CCGCGaCC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 78951 0.68 0.287283
Target:  5'- uGUGCCCCgcaGGC-UGGCGCUcgcgcagccucgGGGGCg- -3'
miRNA:   3'- gCGCGGGG---UCGcACCGCGA------------CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 19424 0.67 0.326995
Target:  5'- gCGCGCCCgUGGCGgcaaGCGCacacGGGCCGc -3'
miRNA:   3'- -GCGCGGG-GUCGCac--CGCGac--CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31855 0.67 0.326995
Target:  5'- gCGCGCCCgGGCucgccGGCGUUGcuGCCGg -3'
miRNA:   3'- -GCGCGGGgUCGca---CCGCGACccCGGC- -5'
6567 3' -67.3 NC_001847.1 + 33697 0.67 0.320103
Target:  5'- gGCGCUCgCGGCGcggcGGCGCgu-GGCCGa -3'
miRNA:   3'- gCGCGGG-GUCGCa---CCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 111280 0.67 0.320103
Target:  5'- gGCGCCgggCCGGgGgcGGCGCUcggccgggggcGGGGCCc -3'
miRNA:   3'- gCGCGG---GGUCgCa-CCGCGA-----------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 71321 0.67 0.31332
Target:  5'- gGgGCCCgCGGaCGUGGaGCUGccaGGGCCa -3'
miRNA:   3'- gCgCGGG-GUC-GCACCgCGAC---CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 34355 0.68 0.306647
Target:  5'- -aCGCCaugaCGGCG-GGCGCUGaugcGGCCGa -3'
miRNA:   3'- gcGCGGg---GUCGCaCCGCGACc---CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 82888 0.68 0.299433
Target:  5'- gCGCGCCgCAgccaagccgcggcGCGcGGCGCccgGGGGCUu -3'
miRNA:   3'- -GCGCGGgGU-------------CGCaCCGCGa--CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 46756 0.68 0.293629
Target:  5'- gCGCGCCCgccCGccGCGC-GGGGCCGg -3'
miRNA:   3'- -GCGCGGGgucGCacCGCGaCCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.