miRNA display CGI


Results 161 - 180 of 411 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 106109 0.67 0.333996
Target:  5'- gCGCGCagCUCGGCGagcgcGGCGC-GGGcGCCGc -3'
miRNA:   3'- -GCGCG--GGGUCGCa----CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 43246 0.67 0.326995
Target:  5'- gGCGCgCgGGCGgcgcGGCGCccggGGGGCa- -3'
miRNA:   3'- gCGCGgGgUCGCa---CCGCGa---CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 31855 0.67 0.326995
Target:  5'- gCGCGCCCgGGCucgccGGCGUUGcuGCCGg -3'
miRNA:   3'- -GCGCGGGgUCGca---CCGCGACccCGGC- -5'
6567 3' -67.3 NC_001847.1 + 43001 0.67 0.320103
Target:  5'- -aCGCCgCCGGgGgGGCGCgccGGGCCGc -3'
miRNA:   3'- gcGCGG-GGUCgCaCCGCGac-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 15518 0.67 0.320103
Target:  5'- uGCGgCUCGGCGggagccgcgGGCuGCUGGcGCCGg -3'
miRNA:   3'- gCGCgGGGUCGCa--------CCG-CGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 105558 0.67 0.31332
Target:  5'- gGC-CCCCGGCccGGCGCgGcGGcGCCGg -3'
miRNA:   3'- gCGcGGGGUCGcaCCGCGaC-CC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 81557 0.68 0.306647
Target:  5'- uCGCcgGCCCC-GCGcagcuGCGC-GGGGCCGg -3'
miRNA:   3'- -GCG--CGGGGuCGCac---CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 6342 0.68 0.300084
Target:  5'- gGUGCCCCGGCGgcaaccGCGCcGcGGGCg- -3'
miRNA:   3'- gCGCGGGGUCGCac----CGCGaC-CCCGgc -5'
6567 3' -67.3 NC_001847.1 + 19630 0.68 0.293629
Target:  5'- gGgGCgCCGGCGUcGGCGCgc-GGCCGc -3'
miRNA:   3'- gCgCGgGGUCGCA-CCGCGaccCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 131896 0.67 0.340391
Target:  5'- gGCGCCCCugccgccGGCGagcacGGCGCgGGcGGCgCGc -3'
miRNA:   3'- gCGCGGGG-------UCGCa----CCGCGaCC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 59161 0.67 0.341106
Target:  5'- gGCGCCgcuuggCCAGgG-GGCgGCggucgagGGGGCCGu -3'
miRNA:   3'- gCGCGG------GGUCgCaCCG-CGa------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 87670 0.76 0.085732
Target:  5'- uGCGCCgCauGGCccgGGCGCUGGGGCUGc -3'
miRNA:   3'- gCGCGGgG--UCGca-CCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3848 0.77 0.068435
Target:  5'- gCGcCGCCCCAGaCGUagacGGCGCcGGGGCUGc -3'
miRNA:   3'- -GC-GCGGGGUC-GCA----CCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 132917 0.78 0.054523
Target:  5'- cCGCG-CCCAGCGccgcGGCGCUGGcGGCCu -3'
miRNA:   3'- -GCGCgGGGUCGCa---CCGCGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 61921 0.66 0.369873
Target:  5'- cCGcCGCCCCccuccuccgcgucAGCGgcGGCGCggcccgcGcGGGCCGa -3'
miRNA:   3'- -GC-GCGGGG-------------UCGCa-CCGCGa------C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 71206 0.66 0.363089
Target:  5'- uGCuGCCCCcGCGgccGCGCUGGGugauggaguguGCCa -3'
miRNA:   3'- gCG-CGGGGuCGCac-CGCGACCC-----------CGGc -5'
6567 3' -67.3 NC_001847.1 + 59838 0.67 0.358615
Target:  5'- aGCGCCUCgcggggcaccggccaGGCGcGGuCGCcGaGGGCCGg -3'
miRNA:   3'- gCGCGGGG---------------UCGCaCC-GCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 49375 0.67 0.354916
Target:  5'- gGuCGCCggcacuaagacuaCCGGCcuggGUGGCGC-GGGGCUGa -3'
miRNA:   3'- gC-GCGG-------------GGUCG----CACCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 132309 0.67 0.348326
Target:  5'- gCGCGCUguucagcccgCCGGCGgaggugccGGCGCggcUGGcGGCCGc -3'
miRNA:   3'- -GCGCGG----------GGUCGCa-------CCGCG---ACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 95382 0.67 0.341106
Target:  5'- cCGCGCCgCCGGCucugaggccGGCGCcGGGGacaaCGa -3'
miRNA:   3'- -GCGCGG-GGUCGca-------CCGCGaCCCCg---GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.