miRNA display CGI


Results 81 - 100 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 118880 0.67 0.348326
Target:  5'- cCGgGCgCUCGGUGcacGGgGCcGGGGCCGg -3'
miRNA:   3'- -GCgCG-GGGUCGCa--CCgCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103097 0.67 0.348326
Target:  5'- cCGCGCCCCGGaccuuuCGCgGGGGCUu -3'
miRNA:   3'- -GCGCGGGGUCgcacc-GCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 96609 0.67 0.348326
Target:  5'- aCGCGgguuuUCCUugcGCGU-GCGCgGGGGCCGg -3'
miRNA:   3'- -GCGC-----GGGGu--CGCAcCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 42342 0.67 0.348326
Target:  5'- gGCGCCC--GUGUGGCGC-GGcGGCg- -3'
miRNA:   3'- gCGCGGGguCGCACCGCGaCC-CCGgc -5'
6567 3' -67.3 NC_001847.1 + 29496 0.67 0.348326
Target:  5'- gCGCGCUguucagcccgCCGGCGgaggugccGGCGCggcUGGcGGCCGc -3'
miRNA:   3'- -GCGCGG----------GGUCGCa-------CCGCG---ACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 101912 0.67 0.341106
Target:  5'- gGCGCCgCGGCGcccGGCGC-GGcGCCa -3'
miRNA:   3'- gCGCGGgGUCGCa--CCGCGaCCcCGGc -5'
6567 3' -67.3 NC_001847.1 + 42095 0.67 0.341106
Target:  5'- uCGCgGUgCCGGCaccGUccaGGCGCcgGGGGCCGc -3'
miRNA:   3'- -GCG-CGgGGUCG---CA---CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 127032 0.67 0.348326
Target:  5'- gGgGCCCC-GCGccuGCGCUGGcGCCGc -3'
miRNA:   3'- gCgCGGGGuCGCac-CGCGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 121853 0.67 0.355654
Target:  5'- gGCGCCCgcgUAGCGc-GCGCacaGGGCCGg -3'
miRNA:   3'- gCGCGGG---GUCGCacCGCGac-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 131285 0.67 0.355654
Target:  5'- gCGCaGCCCCGGCGccgucuaCGuCUGGGGCgGc -3'
miRNA:   3'- -GCG-CGGGGUCGCacc----GC-GACCCCGgC- -5'
6567 3' -67.3 NC_001847.1 + 29981 0.66 0.370632
Target:  5'- aCGCGgCCgGGCc-GGCGCggcGGGaGCCGc -3'
miRNA:   3'- -GCGCgGGgUCGcaCCGCGa--CCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 122379 0.66 0.370632
Target:  5'- aGCGCgUCCAGCGacaUcugcgcgaagaaGGCGCU-GGGCCGc -3'
miRNA:   3'- gCGCG-GGGUCGC---A------------CCGCGAcCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 126527 0.66 0.363089
Target:  5'- cCGCucCCCCGGCGgggcuuGCGCUGcGGCUGa -3'
miRNA:   3'- -GCGc-GGGGUCGCac----CGCGACcCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 31441 0.66 0.363089
Target:  5'- gGCGgCCgCGGCGgccccGGCGC--GGGCCGc -3'
miRNA:   3'- gCGCgGG-GUCGCa----CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 14308 0.66 0.363089
Target:  5'- uCGCgGCCCCGcucccGC-UGcucGCGgUGGGGCCGg -3'
miRNA:   3'- -GCG-CGGGGU-----CGcAC---CGCgACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 66688 0.66 0.363089
Target:  5'- gGgGCCCCGGCcgcgGGCGC-GGaccucugcGGCCGc -3'
miRNA:   3'- gCgCGGGGUCGca--CCGCGaCC--------CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 23431 0.66 0.363089
Target:  5'- gGCGUCCggggucguCGGCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- gCGCGGG--------GUCGCaCCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 104517 0.66 0.362341
Target:  5'- gGCgGCCgCC-GCGUuugcGGCGCUgcgcggcggccccGGGGCCGc -3'
miRNA:   3'- gCG-CGG-GGuCGCA----CCGCGA-------------CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 70690 0.67 0.355654
Target:  5'- cCGCGCCgCC-GCG-GGCgGCggcgGGGGCg- -3'
miRNA:   3'- -GCGCGG-GGuCGCaCCG-CGa---CCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 119214 0.67 0.341106
Target:  5'- gGCGCCgCggccaccgcggGGCGgcggGGCagGCaUGGGGCCGu -3'
miRNA:   3'- gCGCGGgG-----------UCGCa---CCG--CG-ACCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.