Results 101 - 120 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 27961 | 0.67 | 0.333996 |
Target: 5'- gCGCGCUCgCGGuCGcGGUGgaGGcGGCCGc -3' miRNA: 3'- -GCGCGGG-GUC-GCaCCGCgaCC-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 98229 | 0.67 | 0.333996 |
Target: 5'- aGCGCgCCCAGggaggcgacgcCGUGGCGgC-GGGGCa- -3' miRNA: 3'- gCGCG-GGGUC-----------GCACCGC-GaCCCCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 3296 | 0.67 | 0.333996 |
Target: 5'- gCGCGCagCUCGGCGagcgcGGCGC-GGGcGCCGc -3' miRNA: 3'- -GCGCG--GGGUCGCa----CCGCGaCCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 74421 | 0.67 | 0.332587 |
Target: 5'- cCGCGCCCgucguggaggucgUGGCGgcgcacgacgccgUGGCGCUgcaguacgagcgGGGGCUGg -3' miRNA: 3'- -GCGCGGG-------------GUCGC-------------ACCGCGA------------CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 49797 | 0.67 | 0.331884 |
Target: 5'- aCGC-CCCCGG-GUGcgcugcugcugggcGCGCUGGcGGCCu -3' miRNA: 3'- -GCGcGGGGUCgCAC--------------CGCGACC-CCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 42342 | 0.67 | 0.348326 |
Target: 5'- gGCGCCC--GUGUGGCGC-GGcGGCg- -3' miRNA: 3'- gCGCGGGguCGCACCGCGaCC-CCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 96609 | 0.67 | 0.348326 |
Target: 5'- aCGCGgguuuUCCUugcGCGU-GCGCgGGGGCCGg -3' miRNA: 3'- -GCGC-----GGGGu--CGCAcCGCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 14308 | 0.66 | 0.363089 |
Target: 5'- uCGCgGCCCCGcucccGC-UGcucGCGgUGGGGCCGg -3' miRNA: 3'- -GCG-CGGGGU-----CGcAC---CGCgACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 66688 | 0.66 | 0.363089 |
Target: 5'- gGgGCCCCGGCcgcgGGCGC-GGaccucugcGGCCGc -3' miRNA: 3'- gCgCGGGGUCGca--CCGCGaCC--------CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 23431 | 0.66 | 0.363089 |
Target: 5'- gGCGUCCggggucguCGGCGgGGCGUccGGGGUCGu -3' miRNA: 3'- gCGCGGG--------GUCGCaCCGCGa-CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 104517 | 0.66 | 0.362341 |
Target: 5'- gGCgGCCgCC-GCGUuugcGGCGCUgcgcggcggccccGGGGCCGc -3' miRNA: 3'- gCG-CGG-GGuCGCA----CCGCGA-------------CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 70690 | 0.67 | 0.355654 |
Target: 5'- cCGCGCCgCC-GCG-GGCgGCggcgGGGGCg- -3' miRNA: 3'- -GCGCGG-GGuCGCaCCG-CGa---CCCCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 131285 | 0.67 | 0.355654 |
Target: 5'- gCGCaGCCCCGGCGccgucuaCGuCUGGGGCgGc -3' miRNA: 3'- -GCG-CGGGGUCGCacc----GC-GACCCCGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 121853 | 0.67 | 0.355654 |
Target: 5'- gGCGCCCgcgUAGCGc-GCGCacaGGGCCGg -3' miRNA: 3'- gCGCGGG---GUCGCacCGCGac-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 127032 | 0.67 | 0.348326 |
Target: 5'- gGgGCCCC-GCGccuGCGCUGGcGCCGc -3' miRNA: 3'- gCgCGGGGuCGCac-CGCGACCcCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 11558 | 0.67 | 0.355654 |
Target: 5'- aGUGCgCCCAGCG-GGUGCggcugccGcGGuGCCGg -3' miRNA: 3'- gCGCG-GGGUCGCaCCGCGa------C-CC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 96648 | 0.67 | 0.348326 |
Target: 5'- aCGCGUCgugcgcgggggCCGGCGgguacgcgucGuGCGCgGGGGCCGg -3' miRNA: 3'- -GCGCGG-----------GGUCGCa---------C-CGCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29150 | 0.67 | 0.348326 |
Target: 5'- uGCGCCgucgCCugccGCGaGGCGCUGGaGGCgGc -3' miRNA: 3'- gCGCGG----GGu---CGCaCCGCGACC-CCGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 118880 | 0.67 | 0.348326 |
Target: 5'- cCGgGCgCUCGGUGcacGGgGCcGGGGCCGg -3' miRNA: 3'- -GCgCG-GGGUCGCa--CCgCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 103097 | 0.67 | 0.348326 |
Target: 5'- cCGCGCCCCGGaccuuuCGCgGGGGCUu -3' miRNA: 3'- -GCGCGGGGUCgcacc-GCGaCCCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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