miRNA display CGI


Results 121 - 140 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 80340 0.67 0.320103
Target:  5'- cCGCGCUcgCCAGCGcGGCGC-GGaaGGCgCGg -3'
miRNA:   3'- -GCGCGG--GGUCGCaCCGCGaCC--CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 105717 0.67 0.320103
Target:  5'- -aCGCCCCAGCGcucgcUGGCGCgcaGGUCa -3'
miRNA:   3'- gcGCGGGGUCGC-----ACCGCGaccCCGGc -5'
6567 3' -67.3 NC_001847.1 + 30418 0.67 0.336827
Target:  5'- cCGCGCCgCGGCGggcUcucgcacgcgcucgcGGCGCUGGGcaaCCGg -3'
miRNA:   3'- -GCGCGGgGUCGC---A---------------CCGCGACCCc--GGC- -5'
6567 3' -67.3 NC_001847.1 + 29083 0.67 0.340391
Target:  5'- gGCGCCCCugccgccGGCGagcacGGCGCgGGcGGCgCGc -3'
miRNA:   3'- gCGCGGGG-------UCGCa----CCGCGaCC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 95157 0.67 0.341106
Target:  5'- gGUGCCggcaUGGCGgggGGCGCgaucgGGGGCgCGa -3'
miRNA:   3'- gCGCGGg---GUCGCa--CCGCGa----CCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 121853 0.67 0.355654
Target:  5'- gGCGCCCgcgUAGCGc-GCGCacaGGGCCGg -3'
miRNA:   3'- gCGCGGG---GUCGCacCGCGac-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 127032 0.67 0.348326
Target:  5'- gGgGCCCC-GCGccuGCGCUGGcGCCGc -3'
miRNA:   3'- gCgCGGGGuCGCac-CGCGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 11558 0.67 0.355654
Target:  5'- aGUGCgCCCAGCG-GGUGCggcugccGcGGuGCCGg -3'
miRNA:   3'- gCGCG-GGGUCGCaCCGCGa------C-CC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 96648 0.67 0.348326
Target:  5'- aCGCGUCgugcgcgggggCCGGCGgguacgcgucGuGCGCgGGGGCCGg -3'
miRNA:   3'- -GCGCGG-----------GGUCGCa---------C-CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29150 0.67 0.348326
Target:  5'- uGCGCCgucgCCugccGCGaGGCGCUGGaGGCgGc -3'
miRNA:   3'- gCGCGG----GGu---CGCaCCGCGACC-CCGgC- -5'
6567 3' -67.3 NC_001847.1 + 118880 0.67 0.348326
Target:  5'- cCGgGCgCUCGGUGcacGGgGCcGGGGCCGg -3'
miRNA:   3'- -GCgCG-GGGUCGCa--CCgCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 103097 0.67 0.348326
Target:  5'- cCGCGCCCCGGaccuuuCGCgGGGGCUu -3'
miRNA:   3'- -GCGCGGGGUCgcacc-GCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 66208 0.67 0.320103
Target:  5'- gGCGCcgCCCAGCGgcggcucgGGCGCgcgcaaaaGGGCUGc -3'
miRNA:   3'- gCGCG--GGGUCGCa-------CCGCGac------CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 96609 0.67 0.348326
Target:  5'- aCGCGgguuuUCCUugcGCGU-GCGCgGGGGCCGg -3'
miRNA:   3'- -GCGC-----GGGGu--CGCAcCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 42342 0.67 0.348326
Target:  5'- gGCGCCC--GUGUGGCGC-GGcGGCg- -3'
miRNA:   3'- gCGCGGGguCGCACCGCGaCC-CCGgc -5'
6567 3' -67.3 NC_001847.1 + 29496 0.67 0.348326
Target:  5'- gCGCGCUguucagcccgCCGGCGgaggugccGGCGCggcUGGcGGCCGc -3'
miRNA:   3'- -GCGCGG----------GGUCGCa-------CCGCG---ACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 101912 0.67 0.341106
Target:  5'- gGCGCCgCGGCGcccGGCGC-GGcGCCa -3'
miRNA:   3'- gCGCGGgGUCGCa--CCGCGaCCcCGGc -5'
6567 3' -67.3 NC_001847.1 + 42095 0.67 0.341106
Target:  5'- uCGCgGUgCCGGCaccGUccaGGCGCcgGGGGCCGc -3'
miRNA:   3'- -GCG-CGgGGUCG---CA---CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 119214 0.67 0.341106
Target:  5'- gGCGCCgCggccaccgcggGGCGgcggGGCagGCaUGGGGCCGu -3'
miRNA:   3'- gCGCGGgG-----------UCGCa---CCG--CG-ACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 119094 0.67 0.341106
Target:  5'- gGCGCCgCggccgccgcggGGCGgcggGGCagGCaUGGGGCCGu -3'
miRNA:   3'- gCGCGGgG-----------UCGCa---CCG--CG-ACCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.