Results 141 - 160 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 128102 | 0.67 | 0.326995 |
Target: 5'- gGCGaaagCCCAaacGaCGUGGCGCUGGcGCUGg -3' miRNA: 3'- gCGCg---GGGU---C-GCACCGCGACCcCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 34074 | 0.67 | 0.326995 |
Target: 5'- cCG-GCCCCcGCGgcGGCcCcGGGGCCGg -3' miRNA: 3'- -GCgCGGGGuCGCa-CCGcGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 42095 | 0.67 | 0.341106 |
Target: 5'- uCGCgGUgCCGGCaccGUccaGGCGCcgGGGGCCGc -3' miRNA: 3'- -GCG-CGgGGUCG---CA---CCGCGa-CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 101912 | 0.67 | 0.341106 |
Target: 5'- gGCGCCgCGGCGcccGGCGC-GGcGCCa -3' miRNA: 3'- gCGCGGgGUCGCa--CCGCGaCCcCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29496 | 0.67 | 0.348326 |
Target: 5'- gCGCGCUguucagcccgCCGGCGgaggugccGGCGCggcUGGcGGCCGc -3' miRNA: 3'- -GCGCGG----------GGUCGCa-------CCGCG---ACC-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 42342 | 0.67 | 0.348326 |
Target: 5'- gGCGCCC--GUGUGGCGC-GGcGGCg- -3' miRNA: 3'- gCGCGGGguCGCACCGCGaCC-CCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 96609 | 0.67 | 0.348326 |
Target: 5'- aCGCGgguuuUCCUugcGCGU-GCGCgGGGGCCGg -3' miRNA: 3'- -GCGC-----GGGGu--CGCAcCGCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 103097 | 0.67 | 0.348326 |
Target: 5'- cCGCGCCCCGGaccuuuCGCgGGGGCUu -3' miRNA: 3'- -GCGCGGGGUCgcacc-GCGaCCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 118880 | 0.67 | 0.348326 |
Target: 5'- cCGgGCgCUCGGUGcacGGgGCcGGGGCCGg -3' miRNA: 3'- -GCgCG-GGGUCGCa--CCgCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29150 | 0.67 | 0.348326 |
Target: 5'- uGCGCCgucgCCugccGCGaGGCGCUGGaGGCgGc -3' miRNA: 3'- gCGCGG----GGu---CGCaCCGCGACC-CCGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 119214 | 0.67 | 0.341106 |
Target: 5'- gGCGCCgCggccaccgcggGGCGgcggGGCagGCaUGGGGCCGu -3' miRNA: 3'- gCGCGGgG-----------UCGCa---CCG--CG-ACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 119094 | 0.67 | 0.341106 |
Target: 5'- gGCGCCgCggccgccgcggGGCGgcggGGCagGCaUGGGGCCGu -3' miRNA: 3'- gCGCGGgG-----------UCGCa---CCG--CG-ACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 49797 | 0.67 | 0.331884 |
Target: 5'- aCGC-CCCCGG-GUGcgcugcugcugggcGCGCUGGcGGCCu -3' miRNA: 3'- -GCGcGGGGUCgCAC--------------CGCGACC-CCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 74421 | 0.67 | 0.332587 |
Target: 5'- cCGCGCCCgucguggaggucgUGGCGgcgcacgacgccgUGGCGCUgcaguacgagcgGGGGCUGg -3' miRNA: 3'- -GCGCGGG-------------GUCGC-------------ACCGCGA------------CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 3296 | 0.67 | 0.333996 |
Target: 5'- gCGCGCagCUCGGCGagcgcGGCGC-GGGcGCCGc -3' miRNA: 3'- -GCGCG--GGGUCGCa----CCGCGaCCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 98229 | 0.67 | 0.333996 |
Target: 5'- aGCGCgCCCAGggaggcgacgcCGUGGCGgC-GGGGCa- -3' miRNA: 3'- gCGCG-GGGUC-----------GCACCGC-GaCCCCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 27961 | 0.67 | 0.333996 |
Target: 5'- gCGCGCUCgCGGuCGcGGUGgaGGcGGCCGc -3' miRNA: 3'- -GCGCGGG-GUC-GCaCCGCgaCC-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 30418 | 0.67 | 0.336827 |
Target: 5'- cCGCGCCgCGGCGggcUcucgcacgcgcucgcGGCGCUGGGcaaCCGg -3' miRNA: 3'- -GCGCGGgGUCGC---A---------------CCGCGACCCc--GGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29083 | 0.67 | 0.340391 |
Target: 5'- gGCGCCCCugccgccGGCGagcacGGCGCgGGcGGCgCGc -3' miRNA: 3'- gCGCGGGG-------UCGCa----CCGCGaCC-CCG-GC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 95157 | 0.67 | 0.341106 |
Target: 5'- gGUGCCggcaUGGCGgggGGCGCgaucgGGGGCgCGa -3' miRNA: 3'- gCGCGGg---GUCGCa--CCGCGa----CCCCG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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