Results 21 - 40 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 36087 | 0.66 | 0.393893 |
Target: 5'- aCGCGCggcuggcggagCgCGGCGacGCGCUGGGcGCCu -3' miRNA: 3'- -GCGCG-----------GgGUCGCacCGCGACCC-CGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 116389 | 0.66 | 0.393893 |
Target: 5'- cCGCcuuaGCCgCGGCGgcGGCGCUcuGGGCCc -3' miRNA: 3'- -GCG----CGGgGUCGCa-CCGCGAc-CCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 31727 | 0.66 | 0.393893 |
Target: 5'- gCGCGCCgCuGCGgagcGGcCGCgGaGGGCCa -3' miRNA: 3'- -GCGCGGgGuCGCa---CC-GCGaC-CCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29394 | 0.66 | 0.393893 |
Target: 5'- cCGCGCUggaGGCGgccGCGCUGGcGGCgCGg -3' miRNA: 3'- -GCGCGGgg-UCGCac-CGCGACC-CCG-GC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 39835 | 0.66 | 0.393893 |
Target: 5'- aGCGCuUCCuGCGUGGCGCgcgccaGCCGc -3' miRNA: 3'- gCGCG-GGGuCGCACCGCGaccc--CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 4476 | 0.66 | 0.393893 |
Target: 5'- gGCGCCCCccGCGUcccuGGCGCcGGcguccucGCCGa -3' miRNA: 3'- gCGCGGGGu-CGCA----CCGCGaCCc------CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 60801 | 0.66 | 0.393893 |
Target: 5'- gCGCGCCaCCAGCGcGcGCGCcUGcGGCa- -3' miRNA: 3'- -GCGCGG-GGUCGCaC-CGCG-ACcCCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 75830 | 0.66 | 0.393103 |
Target: 5'- gGCGCCgCCGGCGccgcgccUGGCaccCUGGGuaCGg -3' miRNA: 3'- gCGCGG-GGUCGC-------ACCGc--GACCCcgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 108620 | 0.66 | 0.389166 |
Target: 5'- aCGUGCUCCGGgGgacggcgGGCgacgcugcagaagugGCcGGGGCCGc -3' miRNA: 3'- -GCGCGGGGUCgCa------CCG---------------CGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 134062 | 0.66 | 0.386035 |
Target: 5'- cCGCgGCgCCCGGCGUGGa-CUGGGacGCgGa -3' miRNA: 3'- -GCG-CG-GGGUCGCACCgcGACCC--CGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 86997 | 0.66 | 0.386035 |
Target: 5'- gCGCGCgCCGGCccGGCGgUuaccuGGGCCGc -3' miRNA: 3'- -GCGCGgGGUCGcaCCGCgAc----CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 3138 | 0.66 | 0.386035 |
Target: 5'- cCGgGagCCCGGCGgcgccggcGGCGCgGcGGGCCGc -3' miRNA: 3'- -GCgCg-GGGUCGCa-------CCGCGaC-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 105951 | 0.66 | 0.386035 |
Target: 5'- cCGgGagCCCGGCGgcgccggcGGCGCgGcGGGCCGc -3' miRNA: 3'- -GCgCg-GGGUCGCa-------CCGCGaC-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 100508 | 0.66 | 0.386035 |
Target: 5'- gGCGgUgCGGUGUGGUggGCUGcGGGUCGc -3' miRNA: 3'- gCGCgGgGUCGCACCG--CGAC-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 18809 | 0.66 | 0.386035 |
Target: 5'- gCGCGCgCCAGCGc-GCGCauGGGCaCGg -3' miRNA: 3'- -GCGCGgGGUCGCacCGCGacCCCG-GC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 48371 | 0.66 | 0.386035 |
Target: 5'- aGCGUCaCgAcCGUGGCGCcgccGGGCCGg -3' miRNA: 3'- gCGCGG-GgUcGCACCGCGac--CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 94039 | 0.66 | 0.386035 |
Target: 5'- cCGCGCCaaCCAcGUGcaGGCGCagcuGGGCCGg -3' miRNA: 3'- -GCGCGG--GGU-CGCa-CCGCGac--CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 33051 | 0.66 | 0.386035 |
Target: 5'- aCGCGCUCgCGGCcgaGGCGCUGcGGCa- -3' miRNA: 3'- -GCGCGGG-GUCGca-CCGCGACcCCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 51558 | 0.66 | 0.386035 |
Target: 5'- gGCGCagcucgCCAGCGcuuccgcGGCGCcGGGGCa- -3' miRNA: 3'- gCGCGg-----GGUCGCa------CCGCGaCCCCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 31249 | 0.66 | 0.386035 |
Target: 5'- cCGCgGCgCCCGGCGUGGa-CUGGGacGCgGa -3' miRNA: 3'- -GCG-CG-GGGUCGCACCgcGACCC--CGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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