miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6568 3' -56.9 NC_001847.1 + 88263 0.66 0.845847
Target:  5'- cGCCGGGCggggacggGGGGAGCgCuucGCCUgcuGGGCc -3'
miRNA:   3'- -CGGCUCGa-------UCUCUCG-Guu-CGGG---UCUG- -5'
6568 3' -56.9 NC_001847.1 + 56993 0.66 0.845847
Target:  5'- cGCCGGGUgGGuauGAGCCGcAGgCCGGcGCg -3'
miRNA:   3'- -CGGCUCGaUCu--CUCGGU-UCgGGUC-UG- -5'
6568 3' -56.9 NC_001847.1 + 108761 0.66 0.845847
Target:  5'- uGCCGcGCUGG-GcGCCGGacGCgCCGGGCg -3'
miRNA:   3'- -CGGCuCGAUCuCuCGGUU--CG-GGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 15090 0.66 0.845847
Target:  5'- aGCCgGGGCUaggagcaaAGGGGGCgGucgggggagGGCCUAGGCc -3'
miRNA:   3'- -CGG-CUCGA--------UCUCUCGgU---------UCGGGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 45813 0.66 0.845847
Target:  5'- aGCCcGGC--GGGAGCUgccGCCCGGGCc -3'
miRNA:   3'- -CGGcUCGauCUCUCGGuu-CGGGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 75008 0.66 0.845847
Target:  5'- cGCCG-GCgggcGGGGGGCCAgcgGGCagaAGGCg -3'
miRNA:   3'- -CGGCuCGa---UCUCUCGGU---UCGgg-UCUG- -5'
6568 3' -56.9 NC_001847.1 + 58827 0.66 0.845847
Target:  5'- gGCCGGuGCgAGGGucggcacuugGGCCGGGCCCgcaccuacccgGGGCg -3'
miRNA:   3'- -CGGCU-CGaUCUC----------UCGGUUCGGG-----------UCUG- -5'
6568 3' -56.9 NC_001847.1 + 27088 0.66 0.840938
Target:  5'- cGCCcacGCUGGAGGcgucgccgaggucgcGCCAAGCCUcuucGACg -3'
miRNA:   3'- -CGGcu-CGAUCUCU---------------CGGUUCGGGu---CUG- -5'
6568 3' -56.9 NC_001847.1 + 17246 0.66 0.837625
Target:  5'- uGCCGAGCcuccacGGGGuAGCCGuugcggaaccAGUgCAGGCg -3'
miRNA:   3'- -CGGCUCGa-----UCUC-UCGGU----------UCGgGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 49948 0.66 0.837625
Target:  5'- cGCCGGGCUGcccGGcGCCGAGUacgcgCAGGCc -3'
miRNA:   3'- -CGGCUCGAUc--UCuCGGUUCGg----GUCUG- -5'
6568 3' -56.9 NC_001847.1 + 124976 0.66 0.837625
Target:  5'- aGCCGGcGC-AGcGGGCCGGccuGCUCGGGCg -3'
miRNA:   3'- -CGGCU-CGaUCuCUCGGUU---CGGGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 22163 0.66 0.837625
Target:  5'- aGCCGGcGC-AGcGGGCCGgccuGCUCGGGCg -3'
miRNA:   3'- -CGGCU-CGaUCuCUCGGUu---CGGGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 80830 0.66 0.837625
Target:  5'- cGCCGcGaCUGGGGGGgCAGaUCCGGGCg -3'
miRNA:   3'- -CGGCuC-GAUCUCUCgGUUcGGGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 101152 0.66 0.837625
Target:  5'- --gGGGCUGGggccGGGGCCGGGgCCGGGg -3'
miRNA:   3'- cggCUCGAUC----UCUCGGUUCgGGUCUg -5'
6568 3' -56.9 NC_001847.1 + 73741 0.66 0.829212
Target:  5'- gGCCG-GCUggaGGAGGGCCAcuuuGCgCAGuACc -3'
miRNA:   3'- -CGGCuCGA---UCUCUCGGUu---CGgGUC-UG- -5'
6568 3' -56.9 NC_001847.1 + 34298 0.66 0.829212
Target:  5'- gGCCGGcGCUccGGcccuggccGGAGCC--GCCCGGGCc -3'
miRNA:   3'- -CGGCU-CGA--UC--------UCUCGGuuCGGGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 81140 0.66 0.829212
Target:  5'- cGCUGAccGCgu-AGAGCCAacgcGGCgCCGGGCg -3'
miRNA:   3'- -CGGCU--CGaucUCUCGGU----UCG-GGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 38086 0.66 0.829212
Target:  5'- cGCCGcGGUcGGGGAaaGC--AGCCCGGACg -3'
miRNA:   3'- -CGGC-UCGaUCUCU--CGguUCGGGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 69340 0.66 0.829212
Target:  5'- aGCCGcgcAGCUAGcGGAGC---GUCCGGACc -3'
miRNA:   3'- -CGGC---UCGAUC-UCUCGguuCGGGUCUG- -5'
6568 3' -56.9 NC_001847.1 + 42955 0.66 0.820614
Target:  5'- cGCCGcGCgcggGGGGGGCgGgccgccggccGGCCCGGGu -3'
miRNA:   3'- -CGGCuCGa---UCUCUCGgU----------UCGGGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.