miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6568 5' -64.1 NC_001847.1 + 119077 0.65 0.55547
Target:  5'- uGGaGGCgcccagcaGAG-GCGCCgcggccgccgcggGGCGGCgGGGCa -3'
miRNA:   3'- -CC-CCGa-------CUCgCGCGG-------------CCGCUGaCCCG- -5'
6568 5' -64.1 NC_001847.1 + 37553 0.66 0.550707
Target:  5'- cGGGCgGcccuucggaagacgcGGCgGCGCUGGCcGCUGcGGCu -3'
miRNA:   3'- cCCCGaC---------------UCG-CGCGGCCGcUGAC-CCG- -5'
6568 5' -64.1 NC_001847.1 + 68214 0.66 0.546905
Target:  5'- gGGGGCgca-CGgGCC-GCGGCgGGGCc -3'
miRNA:   3'- -CCCCGacucGCgCGGcCGCUGaCCCG- -5'
6568 5' -64.1 NC_001847.1 + 86176 0.66 0.546905
Target:  5'- cGGaGCUacgugaugacGGGCGCGgccuaCCGGCGGCUGcuGGUg -3'
miRNA:   3'- cCC-CGA----------CUCGCGC-----GGCCGCUGAC--CCG- -5'
6568 5' -64.1 NC_001847.1 + 96628 0.66 0.546905
Target:  5'- -cGGCcaGAGCacaGCGCCGGCGACcGcGCc -3'
miRNA:   3'- ccCCGa-CUCG---CGCGGCCGCUGaCcCG- -5'
6568 5' -64.1 NC_001847.1 + 77462 0.66 0.546905
Target:  5'- cGGGCUGGGgcggGCGCCGGgcgccCGGCccGGCc -3'
miRNA:   3'- cCCCGACUCg---CGCGGCC-----GCUGacCCG- -5'
6568 5' -64.1 NC_001847.1 + 15020 0.66 0.546905
Target:  5'- uGGGGCc--GCGCGagccgCGGCcGCcGGGCg -3'
miRNA:   3'- -CCCCGacuCGCGCg----GCCGcUGaCCCG- -5'
6568 5' -64.1 NC_001847.1 + 74345 0.66 0.546905
Target:  5'- -aGGCgc-GCGCGCUGGUGGCgcgcgugGuGGCg -3'
miRNA:   3'- ccCCGacuCGCGCGGCCGCUGa------C-CCG- -5'
6568 5' -64.1 NC_001847.1 + 132066 0.66 0.546905
Target:  5'- -cGGCcu-GCGCGCCGGaCGcGCUGGcgGCg -3'
miRNA:   3'- ccCCGacuCGCGCGGCC-GC-UGACC--CG- -5'
6568 5' -64.1 NC_001847.1 + 44338 0.66 0.546905
Target:  5'- cGGGCgUGAuuaacGCGCGCCcggGGCuGCUgaacGGGCc -3'
miRNA:   3'- cCCCG-ACU-----CGCGCGG---CCGcUGA----CCCG- -5'
6568 5' -64.1 NC_001847.1 + 57980 0.66 0.546905
Target:  5'- gGGaGGCagGAccgGCGCGgUGGCGGCgcagGcGGCg -3'
miRNA:   3'- -CC-CCGa-CU---CGCGCgGCCGCUGa---C-CCG- -5'
6568 5' -64.1 NC_001847.1 + 61333 0.66 0.546905
Target:  5'- cGGGGC-GGGCGCGCCuagcccacCGGCa-GGCa -3'
miRNA:   3'- -CCCCGaCUCGCGCGGcc------GCUGacCCG- -5'
6568 5' -64.1 NC_001847.1 + 132821 0.66 0.546905
Target:  5'- cGGGUUccGCGCaGCgGGCGugUcgccauGGGCa -3'
miRNA:   3'- cCCCGAcuCGCG-CGgCCGCugA------CCCG- -5'
6568 5' -64.1 NC_001847.1 + 103774 0.66 0.546905
Target:  5'- uGGGuGCUcaGGGCGCgcucGCCGGCGGCgu-GUa -3'
miRNA:   3'- -CCC-CGA--CUCGCG----CGGCCGCUGaccCG- -5'
6568 5' -64.1 NC_001847.1 + 81050 0.66 0.546905
Target:  5'- -cGGC-GAGCGCcucuagguuGCCGGCGAa--GGCg -3'
miRNA:   3'- ccCCGaCUCGCG---------CGGCCGCUgacCCG- -5'
6568 5' -64.1 NC_001847.1 + 29253 0.66 0.546905
Target:  5'- -cGGCcu-GCGCGCCGGaCGcGCUGGcgGCg -3'
miRNA:   3'- ccCCGacuCGCGCGGCC-GC-UGACC--CG- -5'
6568 5' -64.1 NC_001847.1 + 14668 0.66 0.546905
Target:  5'- cGGGGC---GCGUGUCGGCGugcaGGCa -3'
miRNA:   3'- -CCCCGacuCGCGCGGCCGCugacCCG- -5'
6568 5' -64.1 NC_001847.1 + 106110 0.66 0.546905
Target:  5'- --cGuCUGccGGCGCGCgCGGCu-CUGGGCg -3'
miRNA:   3'- cccC-GAC--UCGCGCG-GCCGcuGACCCG- -5'
6568 5' -64.1 NC_001847.1 + 99520 0.66 0.546905
Target:  5'- --cGCUGgccccAGCGcCGCCGGCGGC--GGCg -3'
miRNA:   3'- cccCGAC-----UCGC-GCGGCCGCUGacCCG- -5'
6568 5' -64.1 NC_001847.1 + 68100 0.66 0.546905
Target:  5'- -aGGCUcAGCGUGCCacaagGGCGGCgacGcGGCa -3'
miRNA:   3'- ccCCGAcUCGCGCGG-----CCGCUGa--C-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.