miRNA display CGI


Results 1 - 20 of 312 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6569 3' -52.8 NC_001847.1 + 20011 0.66 0.978593
Target:  5'- aGCAGCGcacuuccaauagGGCGGCccugcgGcCGCCGCc -3'
miRNA:   3'- gCGUCGCaaa---------CUGCUGaa----CaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 2434 0.66 0.977642
Target:  5'- cCGCGGCGgc---CGGCaggGcCGCCGCc -3'
miRNA:   3'- -GCGUCGCaaacuGCUGaa-CaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 105247 0.66 0.977642
Target:  5'- cCGCGGCGgc---CGGCaggGcCGCCGCc -3'
miRNA:   3'- -GCGUCGCaaacuGCUGaa-CaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 83456 0.66 0.977642
Target:  5'- aCGaCGGCGcgcGACGGCgcgcgcGUaCGCCGCc -3'
miRNA:   3'- -GC-GUCGCaaaCUGCUGaa----CA-GCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 84219 0.66 0.977642
Target:  5'- uGCAGgcccUGACGGCcgggGcCGCCGCg -3'
miRNA:   3'- gCGUCgcaaACUGCUGaa--CaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 123800 0.66 0.977642
Target:  5'- gCGCGGCGgcgGcaGCGGCagG-CGCCGUc -3'
miRNA:   3'- -GCGUCGCaaaC--UGCUGaaCaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 64115 0.66 0.977642
Target:  5'- cCGCGGCGccaGACGcguGCgcgGcCGCCGUa -3'
miRNA:   3'- -GCGUCGCaaaCUGC---UGaa-CaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 81363 0.66 0.977642
Target:  5'- uCGCGGCGgcUG-CGguGCUgccgcccUCGCCGCc -3'
miRNA:   3'- -GCGUCGCaaACuGC--UGAac-----AGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 36388 0.66 0.977642
Target:  5'- gGCAGCGcgcgccgcGGCGACggUGcacUCGCgCGCa -3'
miRNA:   3'- gCGUCGCaaa-----CUGCUGa-AC---AGCG-GCG- -5'
6569 3' -52.8 NC_001847.1 + 33177 0.66 0.977642
Target:  5'- uGCAGCGgcUGGcCGGCUcUG-CGCC-Cg -3'
miRNA:   3'- gCGUCGCaaACU-GCUGA-ACaGCGGcG- -5'
6569 3' -52.8 NC_001847.1 + 106413 0.66 0.977642
Target:  5'- gCGCGGCGacgcUGcccGCGGCcg--CGCCGCg -3'
miRNA:   3'- -GCGUCGCaa--AC---UGCUGaacaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 99208 0.66 0.977642
Target:  5'- gGCGGCcgcgcGGCGGCg---CGCCGCc -3'
miRNA:   3'- gCGUCGcaaa-CUGCUGaacaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 73239 0.66 0.977642
Target:  5'- gGCGGCGgcgcgGGCGcGCUcGagGCCGUg -3'
miRNA:   3'- gCGUCGCaaa--CUGC-UGAaCagCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 52312 0.66 0.977642
Target:  5'- gCGCGGCaa---ACGACcggGUCGUCGCc -3'
miRNA:   3'- -GCGUCGcaaacUGCUGaa-CAGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 116148 0.66 0.977642
Target:  5'- gCGCGGCccgaggcgcUGGCGGCcgcgGgCGCCGCg -3'
miRNA:   3'- -GCGUCGcaa------ACUGCUGaa--CaGCGGCG- -5'
6569 3' -52.8 NC_001847.1 + 74475 0.66 0.977642
Target:  5'- aGCGGgGgcugGGCGugUUGaugcagcaGCCGCg -3'
miRNA:   3'- gCGUCgCaaa-CUGCugAACag------CGGCG- -5'
6569 3' -52.8 NC_001847.1 + 96860 0.66 0.977642
Target:  5'- gGCGGCGgugGGCGGCgguccgCGCUGg -3'
miRNA:   3'- gCGUCGCaaaCUGCUGaaca--GCGGCg -5'
6569 3' -52.8 NC_001847.1 + 105087 0.66 0.976157
Target:  5'- aCGCGGCGgaagccgccgucGGCGGCgggGcCGCCGg -3'
miRNA:   3'- -GCGUCGCaaa---------CUGCUGaa-CaGCGGCg -5'
6569 3' -52.8 NC_001847.1 + 2274 0.66 0.976157
Target:  5'- aCGCGGCGgaagccgccgucGGCGGCgggGcCGCCGg -3'
miRNA:   3'- -GCGUCGCaaa---------CUGCUGaa-CaGCGGCg -5'
6569 3' -52.8 NC_001847.1 + 86060 0.66 0.975129
Target:  5'- aCGCAcUGUcUGuuGGCUUGUCgGCUGCc -3'
miRNA:   3'- -GCGUcGCAaACugCUGAACAG-CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.