miRNA display CGI


Results 1 - 20 of 1471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6569 5' -64 NC_001847.1 + 132578 0.66 0.567559
Target:  5'- cGCGCaGGCGcccgcgccgaagacAGCCCGCCGga--GAGCa -3'
miRNA:   3'- -CGCG-CCGCu-------------UCGGGCGGCgccgCUCG- -5'
6569 5' -64 NC_001847.1 + 69593 0.66 0.567559
Target:  5'- cCGCGagcacguagccguccGCGAGcGCCC-CCuCGGUGAGCg -3'
miRNA:   3'- cGCGC---------------CGCUU-CGGGcGGcGCCGCUCG- -5'
6569 5' -64 NC_001847.1 + 106426 0.66 0.563735
Target:  5'- cUGCaGCcAGGCCauggCGUCGCGGCGcGCg -3'
miRNA:   3'- cGCGcCGcUUCGG----GCGGCGCCGCuCG- -5'
6569 5' -64 NC_001847.1 + 51415 0.66 0.563735
Target:  5'- uUGCGGCGgcGCagacggagCCGcCCGCGcGCGAc- -3'
miRNA:   3'- cGCGCCGCuuCG--------GGC-GGCGC-CGCUcg -5'
6569 5' -64 NC_001847.1 + 80863 0.66 0.563735
Target:  5'- cGCGCGuCGAGG-CCGUC-CGGC-AGCa -3'
miRNA:   3'- -CGCGCcGCUUCgGGCGGcGCCGcUCG- -5'
6569 5' -64 NC_001847.1 + 31303 0.66 0.563735
Target:  5'- gGCGCGGgGAgcgGGCuCUGCUGCGuguuuucgcGCGuGUa -3'
miRNA:   3'- -CGCGCCgCU---UCG-GGCGGCGC---------CGCuCG- -5'
6569 5' -64 NC_001847.1 + 43216 0.66 0.563735
Target:  5'- uGCuCGGCGccguuGCCCgGUgGCGGUGGGg -3'
miRNA:   3'- -CGcGCCGCuu---CGGG-CGgCGCCGCUCg -5'
6569 5' -64 NC_001847.1 + 56142 0.66 0.563735
Target:  5'- gGCuCGGCGggGCUCuaCCGCa-CGGGCa -3'
miRNA:   3'- -CGcGCCGCuuCGGGc-GGCGccGCUCG- -5'
6569 5' -64 NC_001847.1 + 90220 0.66 0.563735
Target:  5'- aGCGCcccaGCGAcacggucgcGGCcgCCGCCGCGGCcuguGAcGCg -3'
miRNA:   3'- -CGCGc---CGCU---------UCG--GGCGGCGCCG----CU-CG- -5'
6569 5' -64 NC_001847.1 + 23580 0.66 0.563735
Target:  5'- cCGgGGCGGAugcgcuuaccuuGCCUuuGCCGgGGCuGGGCc -3'
miRNA:   3'- cGCgCCGCUU------------CGGG--CGGCgCCG-CUCG- -5'
6569 5' -64 NC_001847.1 + 69035 0.66 0.563735
Target:  5'- -gGCGGaaaGAGGCCaUGCa-CGGCGAGa -3'
miRNA:   3'- cgCGCCg--CUUCGG-GCGgcGCCGCUCg -5'
6569 5' -64 NC_001847.1 + 103943 0.66 0.563735
Target:  5'- cGCGCccucaGCGAgAGCaCCGUCGaUGGCGucGGCg -3'
miRNA:   3'- -CGCGc----CGCU-UCG-GGCGGC-GCCGC--UCG- -5'
6569 5' -64 NC_001847.1 + 54509 0.66 0.563735
Target:  5'- cCGCGaGCGccGCCguCGCCaucggcaaccGCGGCGGGg -3'
miRNA:   3'- cGCGC-CGCuuCGG--GCGG----------CGCCGCUCg -5'
6569 5' -64 NC_001847.1 + 109201 0.66 0.563735
Target:  5'- gGCGgGuGCGAucgggcagaccaAGCgCCGgCGgguCGGCGGGCg -3'
miRNA:   3'- -CGCgC-CGCU------------UCG-GGCgGC---GCCGCUCG- -5'
6569 5' -64 NC_001847.1 + 97810 0.66 0.563735
Target:  5'- uCGCGcGCGuGGCCgCGUCGgGcGCGuGCc -3'
miRNA:   3'- cGCGC-CGCuUCGG-GCGGCgC-CGCuCG- -5'
6569 5' -64 NC_001847.1 + 126393 0.66 0.563735
Target:  5'- cCGgGGCGGAugcgcuuaccuuGCCUuuGCCGgGGCuGGGCc -3'
miRNA:   3'- cGCgCCGCUU------------CGGG--CGGCgCCG-CUCG- -5'
6569 5' -64 NC_001847.1 + 96819 0.66 0.563735
Target:  5'- cGCaGCGGCGgcGaCCGCgCG-GGCGuuGGCu -3'
miRNA:   3'- -CG-CGCCGCuuCgGGCG-GCgCCGC--UCG- -5'
6569 5' -64 NC_001847.1 + 3613 0.66 0.563735
Target:  5'- cUGCaGCcAGGCCauggCGUCGCGGCGcGCg -3'
miRNA:   3'- cGCGcCGcUUCGG----GCGGCGCCGCuCG- -5'
6569 5' -64 NC_001847.1 + 75017 0.66 0.563735
Target:  5'- -gGCGcCGAcGCCCccucgcucacGCCGCG-CGAGCg -3'
miRNA:   3'- cgCGCcGCUuCGGG----------CGGCGCcGCUCG- -5'
6569 5' -64 NC_001847.1 + 123863 0.66 0.56278
Target:  5'- cGCGCguacuuGGUaauucagGAAGCCCagcgcCCGCGGCaAGCu -3'
miRNA:   3'- -CGCG------CCG-------CUUCGGGc----GGCGCCGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.